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GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacctgaatcattgcctcggatttgcgtgattatgttatttctacatgatgtaaaaggattgaaaaaaagctttggaacaatttcctgttactg...
species | Physcomitrella patens |
transcript | PP1S160_44V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCCG GT-GAAATTCCTGGAGGAAAGAG-CAAANCCATCCNATTTTTGT-GATAAEST: gi|67718754|gb|BJ969013.1|BJ969013
genomic: GGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCC-Ggtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAA-GAGGCAAA-CCATCC-ATTTTTGTTGATAA
EST: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG GTTGAAATTCCTGGAGEST: gi|162258773|gb|FC434572.1|FC434572
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAG
EST: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGATEST: gi|67727140|gb|BJ977399.1|BJ977399
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
EST: GGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTTGTGCCG GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAEST: gi|22132646|gb|BQ827270.1|BQ827270
genomic: GGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGA-TTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGA
EST: CAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGATEST: gi|208389079|gb|DC937412.1|DC937412
genomic: CAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
EST: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCA-GTGGGAGATTGTGCCG GTTGAA-TTCNTGGAGAAA-AG-CAAACCATCCATTTEST: gi|40781593|gb|AJ583523.1|AJ583523
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTT
EST: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGATEST: gi|162177571|gb|FC352429.1|FC352429
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
EST: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGATEST: gi|208362110|gb|DC943523.1|DC943523
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
EST: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGATEST: gi|162166659|gb|FC343551.1|FC343551
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
EST: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGATEST: gi|19782978|gb|BQ039945.1|BQ039945
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
EST: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacctgaatcattgcctcggatttgcgtgattatgttatttctacatgatgtaaaaggattgaaaaaaagctttggaacaatttcctgttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa