1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCAAATCCGCAACCTCATCGAAATCGCCGAGCAAGAATATGAAAAGGAGAAGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaatgtcaaagttgtagcttatgcttgattttctagttttttgagatttgaacactcatcattgtgcttaatgcccggttttgctgtttagtcctgggagggctccacttgacttgagacttcctgtgcag
species | Physcomitrella patens |
transcript | PP1S15_485V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|67508408|gb|BJ941275.1|BJ941275
genomic: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: ATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162184149|gb|FC358895.1|FC358895
genomic: ATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162219401|gb|FC396918.1|FC396918
genomic: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: GTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162182314|gb|FC357185.1|FC357185
genomic: GTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: CCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162179103|gb|FC356504.1|FC356504
genomic: CCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: GGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAA-TGAAGGGAG-AGAAAGCTCCGTGTTGEST: gi|162174052|gb|FC350567.1|FC350567
genomic: GGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAA-GGAGAAG-AAGCTCCGTGTTG
EST: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162186556|gb|FC363320.1|FC363320
genomic: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162226061|gb|FC401027.1|FC401027
genomic: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162198440|gb|FC375275.1|FC375275
genomic: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: GGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAA-TGAAGGGAGAAGAAGCTCCGTGTTGAEST: gi|162161063|gb|FC337048.1|FC337048
genomic: GGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAA-GGAGAAGAAGCTCCGTGTTGA
EST: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162191124|gb|FC367386.1|FC367386
genomic: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162153514|gb|FC329608.1|FC329608
genomic: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: GCCATCATTCAG GTGGGAGCTCAAACTGAGACAGATTTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162150358|gb|FC326630.1|FC326630
genomic: GCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: GGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162179104|gb|FC356505.1|FC356505
genomic: GGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162198441|gb|FC375276.1|FC375276
genomic: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAGEST: gi|162177440|gb|FC352973.1|FC352973
genomic: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
EST: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAG GTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
genomic: AGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaa ... tcctgtgcagGTGGGAGCTCAAACTGAGACAGAATTGAAGGAGAAGAAGCTCCGTGTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAATCCGCAACCTCATCGAAATCGCCGAGCAAGAATATGAAAAGGAGAAGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaatgtcaaagttgtagcttatgcttgattttctagttttttgagatttgaacactcatcattgtgcttaatgcccggttttgctgtttagtcctgggagggctccacttgacttgagacttcctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG