1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCGGAGCTCGTCTCATTTCCCATGCTGGAAGTTTGACCAACCTTGCGAAGTATCCTGCTTCAACCGTGCAGATATTGGGTGCCGAGAAAGCACTTTTCAGgtgattctcggctattttggaccgatactgctttgtcttccaccattttcgtttctgtaatttgagtatcgtgacggcttaggctgcctcgtatgtggtttctttgagtttttggatacttatagagtttgaatatgcttcgtgcag
species | Physcomitrella patens |
transcript | PP1S15_447V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TATCCTGCTTCAACCGTGCAGATATTGGGTGCCGAGAAAGCACTTTTCAG AGCGCTGAAGACGAAAGGGAACACCCCGAAGTATGGGTTGATCTTTCACTCEST: gi|162189619|gb|FC365841.1|FC365841
genomic: TATCCTGCTTCAACCGTGCAGATATTGGGTGCCGAGAAAGCACTTTTCAGgtgattctcg ... cttcgtgcagAGCGCTGAAGACGAAAGGGAACACCCCGAAGTATGGGTTGATCTTTCACTC
EST: TATCCTGCTTCAACCGTGCAGATATTGGGTGCCGAGAAAGCACTTTTCAG AGCGCTGAAGACGAAAGG
genomic: TATCCTGCTTCAACCGTGCAGATATTGGGTGCCGAGAAAGCACTTTTCAGgtgattctcg ... cttcgtgcagAGCGCTGAAGACGAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGAGCTCGTCTCATTTCCCATGCTGGAAGTTTGACCAACCTTGCGAAGTATCCTGCTTCAACCGTGCAGATATTGGGTGCCGAGAAAGCACTTTTCAGgtgattctcggctattttggaccgatactgctttgtcttccaccattttcgtttctgtaatttgagtatcgtgacggcttaggctgcctcgtatgtggtttctttgagtttttggatacttatagagtttgaatatgcttcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT