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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCCAAGCATGTATGCTAGTCAATGGTTCATCACCGTCTTTTCATACTCCTTCCCTTTCTCCTTAGCTCTGCGGATTTGGGATGTGTTCTTACACGAGgtttcttgcttactcttcctctccctttcagcagctctttacacgtgttatgcatctttgcaatgtccagttcatgtcttgtagagaagtctggataatc...

Basic information

species Physcomitrella patens
transcript PP1S15_13V6.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S15_13V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os08g31840.1 (Oryza sativa), 5'ss of exon 6
AAATCCAAGCATGTATGCTAGTCAATGGTTCATCACCGTCTTTTCATACTCCTTCCCTTTCTCCTTAGCTCTGCGGATTTGGGATGTGTTCTTACACGAGgtttcttgcttactcttcctct--ccctttcagcagctctttacacgtgttatgcatctttgcaatgtccagttcatgtcttgtagagaagtctggataatc
|||||||||||||||||| ||||||||||| ||||| || || || || |||||||||||     || ||||  |  |||||||||| ||| |  | |||||      ||| | |  | | |     ||       || ||||   | | | |      |   | || |   ||          |    | |||     || 
AAATCCAAGCATGTATGCAAGTCAATGGTTTATCACTGTTTTCTCGTATTCCTTCCCTTTTCATCTAACTCTTAGAGTTTGGGATGTCTTCCTGTATGAGgtcagaatcttgcccgccatataattgttctgtttactttttatctgaggt-tatgagctaagattgactgattttcaaggcacaatttattctaatacat-

upper sequence: PP1S15_13V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os08g31840.4 (Oryza sativa), 5'ss of exon 6
-----AAATCCAAGCATGTATGCTAGTCAATGGTTCATCACCGTCTTTTCATACTCCTTCCCTTTCTCCTTAGCTCTGCGGATTTGGGATGTGTTCTTACACGAGgtttcttgcttactcttcctctccctttcagcagctctttacacgtgttatgcatctttgcaatgtccagttcatgtcttgtagagaagtctggataatc
            |  || | |   |||   ||    || |         || |  ||     |    |   |  |    | |     |||   | |   || |    | |  |   |   ||  || |  |||   |   |   | | | | | ||  | || |   |  |   | |    || ||||  || ||| | ||  | 
CGCTTGTGCAGCAATATCTGTATCAGTT--TGAGAAATTAGTTCTGGAGCAAATGCCACAGTTGGGACAGCATTTTATTGAAGAAATGATAAATCCAAGCATgta--tgcaagtcaatggtttatcactgttttctcgtattccttcccttttcatctaactcttagagtttgggatgtcttcctgtat-gaggtcagaatcttg

upper sequence: PP1S15_13V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G047223_T02 (Zea mays), 5'ss of exon 6
AAATCCAAGCATGTATGCTAGTCAATGGTTCATCACCGTCTTTTCATACTCCTTCCCTTTCTCCTTAGCTCTGCGGATTTGGGATGTGTTCTTACACGAGgtttcttgcttactcttcc---tctccctttcag---cagctctttacacgtgttatgcatctttgcaatgtccagttcatgtcttgtagagaagtctggataatc
||| |||||||||||||| ||||||||||| ||||| || || ||||| |||||||| ||     || ||||  |  |||||||||||||  |  | ||||||     ||||  || ||   | | | |||       || |     |  | |||||    |||| |  | | || |   ||  |  || |       | ||| ||
AAACCCAAGCATGTATGCAAGTCAATGGTTTATCACAGTTTTCTCATATTCCTTCCCATTTCATCTAACTCTTAGAGTTTGGGATGTGTTTCTTTATGAGgttagaatcttatcctgccatatgtgcattttgtgtttagattgcaccttgggttatttgacttttctttatgcactat-tgcttcataaatg-----gtatagtc

upper sequence: PP1S15_13V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 6
AAATCCAAGCATGTATGCTAGTCAATGGTTCATCACCGTCTTTTCATACTCCTTCCCTTTCTCCTTAGCTCTGCGGATTTGGGATGTGTTCTTACACGAGgtttcttgcttactcttcctctccctttcagcagctctttacacgtgttatgcatct-ttgcaatgtccagttcatgtcttgtagagaagtctggataatc
|||||| |||||||||||||| || |||||||| || || |||||||| ||||| || ||    || ||||| || ||||||||||| ||| |  ||||||||  |||      ||| | |||      | ||  | ||     | | |||| |||| |    ||| |    | ||   ||  ||                
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTATTTTCATATTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttagttgtg----ctttccctctgaagaaccatttattggttagagatatggatctataatgatgactttcttat-cattccag----------------

upper sequence: PP1S15_13V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA13G07090.1 (Glycine max), 5'ss of exon 5
AAATCCAAGCATGTATGCTAGTCAATGGTTCATCACCGTCTTTTCATACTCCTTCCCTTTCTCCTTAGCTCTGCGGATTTGGGATGTGTTCTTACACGAGgtttcttgcttactcttcctctccctttcagcagctctttacacgtgttatgcatct-ttgcaatgtccagttcatgtcttgtagagaagtctggataatc
|||||| |||||||||||||| || |||||||| || || ||||| |||||||| || ||    || ||||| || ||||||||||| ||  |  | ||||||       ||  ||| |  |       | ||  | ||     |   |||| | || |    ||| |    | ||  |||  ||                
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTTTTTTCGTACTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTATGAGgtt----agctatgctttccatttgaagaaccatttattggttagaaatatggacctataatgatgactttcttat-ccttccag----------------

upper sequence: PP1S15_13V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT3G02460.1 (Arabidopsis thaliana), 5'ss of exon 6
AAATCCAAGCATGTATGCTAGTCAATGGTTCATCACCGTCTTTTCATACTCCTTCCCTTTCTCCTTAGCTCTGCGGATTTGGGATGTGTTCTTACACGAGgtttct---tgcttactcttcctctccctttcagcagctctttacacgtgttatgcatctttgcaatgtcca-gttcatgtcttgtagagaagtctggataatc
 ||||| || |||||||| ||||||||||||||||||||||| |||||||| || |||||| | || ||||| ||||| |||||||||||  |   ||||||  ||   |||  |  |||    || |||| | |   | ||   |       | |||  |   |   || | | ||||   || |  ||              
TAATCCGAGTATGTATGCAAGTCAATGGTTCATCACCGTCTTCTCATACTCATTTCCTTTCCCTTTGGCTCTACGGATATGGGATGTGTTTCTCTCCGAGgtaactaaatgcgcatccttaaaatctcttt-aacgtttgttgtgatcaaagtttcattctgttatcttctatggtcattgtttcttaag--------------

upper sequence: PP1S15_13V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT3G02460.2 (Arabidopsis thaliana), 5'ss of exon 6
AAATCCAAGCATGTATGCTAGTCAATGGTTCATCACCGTCTTTTCATACTCCTTCCCTTTCTCCTTAGCTCTGCGGATTTGGGATGTGTTCTTACACGAGgtttct---tgcttactcttcctctccctttca-gcagctctttacacgtgttatgcatctttgcaatgtccagttcatgtcttgtagagaagtctggataatc
 ||||| || |||||||| ||||||||||||||||||||||| |||||||| || |||||| | || ||||| ||||| |||||||||||  |   ||||||  ||   |||  |  |||    || |||| | |    |  | |     |||        ||    | |   ||   ||| |  ||  |  ||    ||    
TAATCCGAGTATGTATGCAAGTCAATGGTTCATCACCGTCTTCTCATACTCATTTCCTTTCCCTTTGGCTCTACGGATATGGGATGTGTTTCTCTCCGAGgtaactaaatgcgcatccttaaaatctctttaacgtttgttgtgatcaaagtttcattctgttatcttctatggtcattgtttcttaagggtgttaaaat----

upper sequence: PP1S15_13V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT5G15930.1 (Arabidopsis thaliana), 5'ss of exon 6
AAATCCAAGCATGTATGCTAGTCAATGGTTCATCACCGTCTTTTCATACTCCTTCCCTTTCTCCTTAGCTCTGCGGATTTGGGATGTGTTCTTACACGAGgtttcttgcttactcttcctctccctttcagcagctctttacac-gtgttat-gcatctttgcaatgtccagttcatgtcttgtagagaagtctggataatc
 ||||| || |||||||| |||||||||||||| ||||||||||| || ||  | ||||||   | ||| || || ||||||||||||||  ||   |||||   ||   |   | || |||    |  |    ||||||     |||| ||   |||||||   | |   |||  | ||  | | ||              
CAATCCGAGTATGTATGCAAGTCAATGGTTCATAACCGTCTTTTCGTATTCACTTCCTTTCCATTCAGCGCTACGAATTTGGGATGTGTTTCTAGCTGAGgtacttttaatcaacatcttctaatctcaaaagtctctttcttttgtgtcatcatatctttgtgtttttt-gtttgtttccggcatag--------------