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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGCATCAACACCAGCGATGTTCAATAGCACCTTAACAGTTCGAGACGACCTTTTTTGTCCTGTTCAAGGGGCGATAATGATTACAGgtacaaacgccacttgaggacttctcttcttgaaaattttgacgctggttgtcgatagcctacactagtgtatgcctagtccagttgtgtaaacctttttcatgaagttttagtgaagattttcagttggctgaattttattattgcatttacctctgtacag

Basic information

species Physcomitrella patens
transcript PP1S152_87V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196622|gb|FC374912.1|FC374912
EST:     AGTTCGAGACGACCTTTTTTGTCCTGTTCAAGGGGCGATAATGATTACAG                         CAAGTCACCTTCCTTACAACAGAAATGGGCTGAAGTTCTTCACTAGTGACG
genomic: AGTTCGAGACGACCTTTTTTGTCCTGTTCAAGGGGCGATAATGATTACAGgtacaaacgc ... ctctgtacagCAAGTCACCTTCCTTACAACAGAAATGGGCTGAAGTTCTTCACTAGTGACG
EST: gi|162244981|gb|FC424939.1|FC424939
EST:     AGTTCGAGACGACCTTTTTTGTCCTGTTCAAGGGGCGATAATGATTACAG                         CAAGTCACCTTCCTTACAACAGAAATGGGCTGAAGTTCTTCACTAGTGACG
genomic: AGTTCGAGACGACCTTTTTTGTCCTGTTCAAGGGGCGATAATGATTACAGgtacaaacgc ... ctctgtacagCAAGTCACCTTCCTTACAACAGAAATGGGCTGAAGTTCTTCACTAGTGACG
EST: gi|100352594|gb|BY945350.1|BY945350
EST:     AGTTCGAGACGACCTTTTTTGTCCTGTTCAAGGGGCGATAATGATTACAG                         CAAGTCACCTTCCTTACAACAGAAATGGGCTGAAGTTCTTCACTAGTGACG
genomic: AGTTCGAGACGACCTTTTTTGTCCTGTTCAAGGGGCGATAATGATTACAGgtacaaacgc ... ctctgtacagCAAGTCACCTTCCTTACAACAGAAATGGGCTGAAGTTCTTCACTAGTGACG
EST: gi|162159476|gb|FC336265.1|FC336265
EST:     GTTCGAGACGACCNNNNNNNGTCCTGTTCAAGGGGCGATAATGATTACAG                         CAAGTCACCTTCCTTACAACAGAAATGGGCTGAAGTTCTTCACTAGTGACG
genomic: GTTCGAGACGACC-TTTTTTGTCCTGTTCAAGGGGCGATAATGATTACAGgtacaaacgc ... ctctgtacagCAAGTCACCTTCCTTACAACAGAAATGGGCTGAAGTTCTTCACTAGTGACG