1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATTGACCCGAGTGTCACTATGATGACAGTAGAAGAAAAGCCAGATGTTACGTACAATGATATTGGAGGCTGTAAGGAACAAATAGAAAAGATGCGTGAGgttagtgaaaccaacttgttattttttcgtaatttgaatgcttggtttgtgaagtttctggtcctttttggcgagcaacatacttatgcatgttgtattg...
species | Physcomitrella patens |
transcript | PP1S152_13V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGTACAATGATATTGGAGGCTGTAAGGAACAAATAGAAAAGATGCGTGAG GTAGTGGAGTTGCCTATGTTGCACCCGGAGAAGTTCGTAAAATTGGGAATCEST: gi|162256308|gb|FC432318.1|FC432318
genomic: CGTACAATGATATTGGAGGCTGTAAGGAACAAATAGAAAAGATGCGTGAGgttagtgaaa ... tcctgaatagGTAGTGGAGTTGCCTATGTTGCACCCGGAGAAGTTCGTAAAATTGGGAATC
EST: CGTACAATGATATTGGAGGCTGTAAGGAACAAATAGAAAAGATGCGTGAG GTAGTGGAGTTGCCTATGTTGCACCCGGAGAAGTTCGTAAAATTGGGAATCEST: gi|162257097|gb|FC432557.1|FC432557
genomic: CGTACAATGATATTGGAGGCTGTAAGGAACAAATAGAAAAGATGCGTGAGgttagtgaaa ... tcctgaatagGTAGTGGAGTTGCCTATGTTGCACCCGGAGAAGTTCGTAAAATTGGGAATC
EST: CGTACAATGATATTGGAGGCTGTAAGGAACAAATAGAAAAGATGCGTGAG GTAGTGGAGTTGCCTATGTTGCACCCGGAGAAGTTCGTAAAATTGGGAATC
genomic: CGTACAATGATATTGGAGGCTGTAAGGAACAAATAGAAAAGATGCGTGAGgttagtgaaa ... tcctgaatagGTAGTGGAGTTGCCTATGTTGCACCCGGAGAAGTTCGTAAAATTGGGAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGACCCGAGTGTCACTATGATGACAGTAGAAGAAAAGCCAGATGTTACGTACAATGATATTGGAGGCTGTAAGGAACAAATAGAAAAGATGCGTGAGgttagtgaaaccaacttgttattttttcgtaatttgaatgcttggtttgtgaagtttctggtcctttttggcgagcaacatacttatgcatgttgtattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG