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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCCTATTCCCTTAACCCAGAAGTTCAGAGGCATTAATCGTTCTGCTCTTGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattcagcaattccatccagaacgatctaaacaatttacagttacgtggttccaagtcagttttttgaatttaacttgatgttcttgcattgtaagctggtttctgtttttatttatggtgcag

Basic information

species Physcomitrella patens
transcript PP1S149_39V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67691485|gb|BJ951718.1|BJ951718
EST:     TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCGCAG                         TGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
genomic: TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattc ... tatggtgcagTGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
EST: gi|37850795|gb|BJ608803.1|BJ608803
EST:     TGATCTNGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAG                         TGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
genomic: TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattc ... tatggtgcagTGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
EST: gi|37835941|gb|BJ593953.1|BJ593953
EST:     TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAG                         TGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
genomic: TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattc ... tatggtgcagTGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
EST: gi|18334968|gb|BJ166986.1|BJ166986
EST:     TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAG                         TGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
genomic: TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattc ... tatggtgcagTGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
EST: gi|37827341|gb|BJ585353.1|BJ585353
EST:     TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAG                         TGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
genomic: TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattc ... tatggtgcagTGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
EST: gi|162233697|gb|FC409963.1|FC409963
EST:     TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAG                         TGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
genomic: TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattc ... tatggtgcagTGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
EST: gi|162159904|gb|FC336157.1|FC336157
EST:     TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAG                         TGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
genomic: TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattc ... tatggtgcagTGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
EST: gi|162154101|gb|FC330544.1|FC330544
EST:     TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAG                         TGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
genomic: TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattc ... tatggtgcagTGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
EST: gi|162205186|gb|FC381284.1|FC381284
EST:     TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAG                         TGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
genomic: TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattc ... tatggtgcagTGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
EST: gi|67508267|gb|BJ941136.1|BJ941136
EST:     TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCGCAG                         TGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
genomic: TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattc ... tatggtgcagTGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
EST: gi|18335465|gb|BJ167485.1|BJ167485
EST:     TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAG                         TGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG
genomic: TGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattc ... tatggtgcagTGGAAGCTGCCTTGGCGCACCCTTATTTAGCTTCACTTCATGACATCAACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGCCTATTCCCTTAACCCAGAAGTTCAGAGGCATTAATCGTTCTGCTCTTGATCTTGTTGAAAAGATGCTGGTCTTTGATCCAGCGAAAAGAATCACAGgtaccgattcagcaattccatccagaacgatctaaacaatttacagttacgtggttccaagtcagttttttgaatttaacttgatgttcttgcattgtaagctggtttctgtttttatttatggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA