1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGGTTTCTAGTGCGATTGTGGATAAGTACATTGGAGAAAGTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAAgtactacctcttttcatctgcacttggttcagttcttccatattaaagtggttacaggagttacgcttttgttttgttgattaacctccaaaactgctaacgttgttgttgtggtggctactttgtggaccattatctttgcag
species | Physcomitrella patens |
transcript | PP1S13_419V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTACGCCCGTGACCATCAA CCTTGCATCATATTTATGGATGAGATTGATGCCATTGGAGGCCGTCGTTTTEST: gi|37843655|gb|BJ601663.1|BJ601663
genomic: GTTACGCCCGTGACCATCAAgtactacctc ... atctttgcagCCTTGCATCATATTTATGGATGAGATTGATGCCATTGGAGGCCGTCGTTTT
EST: AAAGTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAA CCTTGCATCATATTTATGGATGAGATTGATGCCATTGGAGGCCGTCGTTTTEST: gi|162188781|gb|FC364067.1|FC364067
genomic: AAAGTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAAgtactacctc ... atctttgcagCCTTGCATCATATTTATGGATGAGATTGATGCCATTGGAGGCCGTCGTTTT
EST: GTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAA CCTTGCATCATATTTATGGATGAGATTGATGCCATTGGAGGCCGTCGTTTTEST: gi|208367874|gb|DC955337.1|DC955337
genomic: GTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAAgtactacctc ... atctttgcagCCTTGCATCATATTTATGGATGAGATTGATGCCATTGGAGGCCGTCGTTTT
EST: AAAGTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAA CCTTGCATCATATTTATGGATGAGATTGATGCCATTGGAGGCCGTCGTTTTEST: gi|37853467|gb|BJ611475.1|BJ611475
genomic: AAAGTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAAgtactacctc ... atctttgcagCCTTGCATCATATTTATGGATGAGATTGATGCCATTGGAGGCCGTCGTTTT
EST: AAAGTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAA CCTTGCATCATATTTATGGATGAGATTGATGCCATTGGAGGCCGTCGTTTT
genomic: AAAGTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAAgtactacctc ... atctttgcagCCTTGCATCATATTTATGGATGAGATTGATGCCATTGGAGGCCGTCGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTTTCTAGTGCGATTGTGGATAAGTACATTGGAGAAAGTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAAgtactacctcttttcatctgcacttggttcagttcttccatattaaagtggttacaggagttacgcttttgttttgttgattaacctccaaaactgctaacgttgttgttgtggtggctactttgtggaccattatctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG