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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctctttctatgtcttttggcggtctttatacatttttccgtgatgattggactcgagtcatattcagtaaacgcatacgtttaaatagccctattctttcggcggcgcttctacaacgtacttactgcttcgtacttggagtattattgaaaagaactctgatttaacttcctgttcggttgcag

Basic information

species Physcomitrella patens
transcript PP1S138_84V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162250887|gb|FC425709.1|FC425709
EST:     CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG                         AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: gi|162190026|gb|FC366600.1|FC366600
EST:     CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG                         AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: gi|37834545|gb|BJ592557.1|BJ592557
EST:     CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG                         AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: gi|37825557|gb|BJ583623.1|BJ583623
EST:     CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG                         AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: gi|162190025|gb|FC366599.1|FC366599
EST:     CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG                         AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: gi|67696545|gb|BJ956778.1|BJ956778
EST:     CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG                         AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: gi|37822604|gb|BJ580670.1|BJ580670
EST:     CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG                         AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: gi|67694612|gb|BJ954845.1|BJ954845
EST:     CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG                         AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT