1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAAGAAGTCAGAAAGATAGCTGGAGACCTTCTCATCAATCCTGTTCAGGTTAATATTGGTAACACCGATGAGCTTGCTGCCAACAAATCCATCACTCAGgttcgaatttgagtttctgcactcagactctttgttgtgttcggtgtgagatatatcgattcagtttcaaacttactttctggtccacctctgtctattcttttccttgactaaagctctttgtctgattttttgtttgcag
species | Physcomitrella patens |
transcript | PP1S138_142V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTAATATTGGTAACACCGATGAGCTTGCTGCCAACAAATCCATCACTCAG AATGTGGAGGTAGTTGTGCCCTACGAGAAACAGAGGCGACTAGAGCAGATTEST: gi|162159382|gb|FC335170.1|FC335170
genomic: TTAATATTGGTAACACCGATGAGCTTGCTGCCAACAAATCCATCACTCAGgttcgaattt ... ttgtttgcagAATGTGGAGGTAGTTGTGCCCTACGAGAAACAGAGGCGACTAGAGCAGATT
EST: TTAATATTGGTAACACCGATGAGCTTGCTGCCAACAAATCCATCACTCAG AATGTGGAGGTAGTTGTGCCCTACGAGAAACAGAGGCGACTAGAGCAGATT
genomic: TTAATATTGGTAACACCGATGAGCTTGCTGCCAACAAATCCATCACTCAGgttcgaattt ... ttgtttgcagAATGTGGAGGTAGTTGTGCCCTACGAGAAACAGAGGCGACTAGAGCAGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGAAGTCAGAAAGATAGCTGGAGACCTTCTCATCAATCCTGTTCAGGTTAATATTGGTAACACCGATGAGCTTGCTGCCAACAAATCCATCACTCAGgttcgaatttgagtttctgcactcagactctttgttgtgttcggtgtgagatatatcgattcagtttcaaacttactttctggtccacctctgtctattcttttccttgactaaagctctttgtctgattttttgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC