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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAACTTTCGTCGAGTTTCGCATGGGTATGCTCAATGTTTCTCCAATCGGCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttgctttgttaaacaggttaatttgtgcgatcccgtcagctcttagtggcctgtgtgcttgttttattgtctgatctgttgcaactgaaatagtttctgaagtagccgataaccgtgcaacttttttttattccag

Basic information

species Physcomitrella patens
transcript PP1S137_89V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S137_89V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: AT2G45790.1 (Arabidopsis thaliana), 5'ss of exon 6
GGGAACTTTCGTCGAGTTTCGCATGGGTATGCTCAATGTTTCTCCAATCGGCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttgctttgttaaacaggttaatttgtgcgatcccgtcagctcttagtggcctgtgtgcttgttttattgtctgatctgttgcaactgaaatagtttctgaagtagccgataaccgtgcaacttttttttattccag
|||||| ||  | || || || |  || ||||||||||| || || || || ||||||||||||||||||||  | || || |||||| | ||||||||||||       || | ||        || ||||| | ||  | |        | |    | || || |  |   |   |   | | ||  ||                                                    
GGGAACATTTATTGAATTCCGAAATGGAATGCTCAATGTATCACCCATTGGTCGCAACTGCAGCCAAGAAGAAAGAGATGAATTTGAGAGATATGATAAGgtagaagaaactatatt--------tagtttgttcaatttcttatag----aatatattttgagcattgtcattcaacactttttttaaaag---------------------------------------------------

upper sequence: PP1S137_89V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv15s0046g03520.t01 (Vitis vinifera), 5'ss of exon 7
GGGAACTTTCGTCGAGTTTCGCATGGGTATGCTCAATGTTTCTCCAATCGGCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttgctttgttaaacaggttaatttgtgcgatcccgtcagctcttagtggcctgtgtgcttgttttattgtctgatc-tgttgcaactgaaatagtttctgaagtagccgataaccgtgcaacttttttttattccag
|||||| ||  | ||||| || |  || ||||||||||| || ||||| || || ||||||||||| ||||||||||| ||||||||    ||||| ||||||   |   |||       ||| |   |    || |     | | || | | |    |||||   ||    ||    ||||  | ||   |   | ||   | |||||  |  | | |      ||| || |  | ||  |||
GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGGGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgta---taaactt-------cagatccttcgaagcaaaagattgaactgtcaat---ttgtgtttgtggca-ataaattgattgtatttggataaacatgcatcctgaaacaaacaaca------caatttataatcatatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37827978|gb|BJ585990.1|BJ585990
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|37836492|gb|BJ594500.1|BJ594500
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|67695499|gb|BJ955732.1|BJ955732
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208364031|gb|DC950379.1|DC950379
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208364746|gb|DC954476.1|DC954476
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|37828269|gb|BJ586281.1|BJ586281
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208370169|gb|DC944394.1|DC944394
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208386575|gb|DC952770.1|DC952770
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208347945|gb|DC921202.1|DC921202
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208368085|gb|DC947645.1|DC947645
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|37834823|gb|BJ592835.1|BJ592835
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|162275643|gb|FC451645.1|FC451645
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|162211194|gb|FC386906.1|FC386906
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208362674|gb|DC947165.1|DC947165
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|162201426|gb|FC377152.1|FC377152
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208380771|gb|DC919459.1|DC919459
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|37837928|gb|BJ595936.1|BJ595936
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208357863|gb|DC918625.1|DC918625
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|37851718|gb|BJ609726.1|BJ609726
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|37832314|gb|BJ590326.1|BJ590326
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208360951|gb|DC946640.1|DC946640
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|18338754|gb|BJ170778.1|BJ170778
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208346101|gb|DC917054.1|DC917054
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208356208|gb|DC946256.1|DC946256
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|18334781|gb|BJ166798.1|BJ166798
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208366441|gb|DC947609.1|DC947609
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208385973|gb|DC956811.1|DC956811
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|162250055|gb|FC427364.1|FC427364
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208358539|gb|DC946500.1|DC946500
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208360140|gb|DC950169.1|DC950169
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAG-TTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|162250054|gb|FC427363.1|FC427363
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|162243889|gb|FC423206.1|FC423206
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|37827898|gb|BJ585910.1|BJ585910
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208399394|gb|DC924824.1|DC924824
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|208397251|gb|DC920880.1|DC920880
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|37844098|gb|BJ602106.1|BJ602106
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|162208934|gb|FC385278.1|FC385278
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|37844701|gb|BJ602709.1|BJ602709
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
EST: gi|37826210|gb|BJ584222.1|BJ584222
EST:     GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG                         ATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG
genomic: GCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 31 (downstream exon)
Score: 14

GGGAACTTTCGTCGAGTTTCGCATGGGTATGCTCAATGTTTCTCCAATCGGCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttg ... tttattccagATCCACAACGTGAGGAAGCAGTTCGTGGATATCCTCAAGGAGAAGTTTGCGGACTACAGCTTGACATTCTCCATTGGTGGTCAAATCAGTTTCGAT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGAACTTTCGTCGAGTTTCGCATGGGTATGCTCAATGTTTCTCCAATCGGCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAGgtaatctttgctttgttaaacaggttaatttgtgcgatcccgtcagctcttagtggcctgtgtgcttgttttattgtctgatctgttgcaactgaaatagtttctgaagtagccgataaccgtgcaacttttttttattccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG