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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatcgtgattacgacctcacttctttatattttattttctcctttataagtgaatgatttcttgtctacagtagctacattaaggccgttttaactactttttgggttgtctgactgctaaatttttcaatgctgttgggtattcatcatgctaacgtatatgtcgtggttccttcgtgtttcag

Basic information

species Physcomitrella patens
transcript PP1S136_220V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100429205|gb|BY977993.1|BY977993
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGGC
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGG-C
EST: gi|162274756|gb|FC450510.1|FC450510
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208355346|gb|DC949840.1|DC949840
EST:     TGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100352388|gb|BY983183.1|BY983183
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGA
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGA
EST: gi|67700193|gb|BJ960426.1|BJ960426
EST:     GTTGAGGACGGGAAAAAGAAAGT                         CTAAGCNATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: GTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208393325|gb|DC903999.1|DC903999
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208351521|gb|DC909979.1|DC909979
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162270739|gb|FC446352.1|FC446352
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162208445|gb|FC384408.1|FC384408
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162168874|gb|FC345348.1|FC345348
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|67507874|gb|BJ940750.1|BJ940750
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162271254|gb|FC447191.1|FC447191
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162273379|gb|FC449828.1|FC449828
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|22492259|gb|BU052182.1|BU052182
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208387752|gb|DC941321.1|DC941321
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100399380|gb|BY954341.1|BY954341
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162241861|gb|FC418116.1|FC418116
EST:     TGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100375740|gb|BY968173.1|BY968173
EST:     TTGCTGAAGATGAAATGTTCCGTGTNNGT-GAG-ACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAAGTCACATTTGTTGGGAC-AGGC
genomic: TTGCTGAAGATGAAATGTTCCGTGT--GTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGG-ACCAGGC
EST: gi|67569695|gb|BJ942519.1|BJ942519
EST:     TTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100402534|gb|BY954883.1|BY954883
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100440241|gb|BY962134.1|BY962134
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162212959|gb|FC389175.1|FC389175
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208392237|gb|DC949613.1|DC949613
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208388753|gb|DC953487.1|DC953487
EST:     TATTGCTGNAGATGAAATGTTCCGTGTGNTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208379321|gb|DC918979.1|DC918979
EST:     GACGGGAAAAAGAAAGT                         CTAAGCAA-NGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: GACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162199735|gb|FC375974.1|FC375974
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162241862|gb|FC418117.1|FC418117
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100396887|gb|BY953877.1|BY953877
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAANGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208365753|gb|DC935808.1|DC935808
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162270738|gb|FC446351.1|FC446351
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100437696|gb|BY979783.1|BY979783
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTNGT-GGACCAGGC
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTT-GTTGGACCAGGC
EST: gi|208344530|gb|DC905091.1|DC905091
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208390066|gb|DC938121.1|DC938121
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162271253|gb|FC447190.1|FC447190
EST:     GCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: GCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208385275|gb|DC915075.1|DC915075
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162199734|gb|FC375973.1|FC375973
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100380682|gb|BY986734.1|BY986734
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208375393|gb|DC940475.1|DC940475
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208349718|gb|DC917896.1|DC917896
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208391122|gb|DC942062.1|DC942062
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208373470|gb|DC941067.1|DC941067
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAANCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAAGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162184428|gb|FC359174.1|FC359174
EST:     TTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162208303|gb|FC384407.1|FC384407
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGA-GACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208394661|gb|DC928821.1|DC928821
EST:     TA-TGCTGAAGATGAAATGTTCCGTGTG-TGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162184429|gb|FC359175.1|FC359175
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162155076|gb|FC330870.1|FC330870
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162234658|gb|FC410404.1|FC410404
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208369176|gb|DC936033.1|DC936033
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100361629|gb|BY966146.1|BY966146
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGNAC-AGGG
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGG-ACCAGG-
EST: gi|162273378|gb|FC449827.1|FC449827
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208363110|gb|DC954324.1|DC954324
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100447434|gb|CJ971733.1|CJ971733
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAANGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|67692960|gb|BJ953193.1|BJ953193
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100366881|gb|BY948257.1|BY948257
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGGAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162274757|gb|FC450511.1|FC450511
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162155077|gb|FC330871.1|FC330871
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100415702|gb|BY992962.1|BY992962
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162234657|gb|FC410403.1|FC410403
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|67700239|gb|BJ960472.1|BJ960472
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|208381956|gb|DC923829.1|DC923829
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|162212960|gb|FC389176.1|FC389176
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100425001|gb|BY976922.1|BY976922
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAAGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
EST: gi|100392894|gb|BY989661.1|BY989661
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGT-GGNACCAGGC
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGG-ACCAGGC
EST: gi|208365968|gb|DC951169.1|DC951169
EST:     TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT                         CTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT
genomic: TATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 17

GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatc ... cgtgtttcagCTAAGCAATGGAAACGAATGGTGACGAAGGTCACATTTGTTGGACCAGGCTTCACTCGCAAGCCTCCTAAGTACGAGCGGTTTATCAGGCCCATGGGACT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGTgtgagttatcgtgattacgacctcacttctttatattttattttctcctttataagtgaatgatttcttgtctacagtagctacattaaggccgttttaactactttttgggttgtctgactgctaaatttttcaatgctgttgggtattcatcatgctaacgtatatgtcgtggttccttcgtgtttcag

- - - - - -  CTGAAG
- - - - - - - TGAAGA
- - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA