1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACTCCCTGGAGTCAATGCTTCAGAAAACCGTATTATGGACTCCAGCGTTAGTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcattttatatttatttcaaaagaatcgctcatgatttcagttctcgattctagcagtgcaacagattcaagttcatgaaggaatagaaacgatttagggttgataatgtttttagggtcaactttttcatgaaattttctcttcggctacaacaatgctctgacggttgcgtcttttttctaagcag
species | Physcomitrella patens |
transcript | PP1S134_26V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACCEST: gi|162259126|gb|FC435185.1|FC435185
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACCEST: gi|162272666|gb|FC448292.1|FC448292
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACCEST: gi|162189954|gb|FC365618.1|FC365618
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACCEST: gi|37831023|gb|BJ589035.1|BJ589035
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACCEST: gi|37843892|gb|BJ601900.1|BJ601900
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACCEST: gi|37845078|gb|BJ603086.1|BJ603086
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACCEST: gi|162235645|gb|FC411390.1|FC411390
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCCCTGGAGTCAATGCTTCAGAAAACCGTATTATGGACTCCAGCGTTAGTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcattttatatttatttcaaaagaatcgctcatgatttcagttctcgattctagcagtgcaacagattcaagttcatgaaggaatagaaacgatttagggttgataatgtttttagggtcaactttttcatgaaattttctcttcggctacaacaatgctctgacggttgcgtcttttttctaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA