Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCTCTCGATTTACTCCCACCCAGCCCAATGGTTTTGGATAACTGGAAGCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatgtgattttcgtacgatagtccgaattgacagtgactgtgtatgttcaactctgttgacgtgatcttttgtgttgtattttgtctgtttttt...

Basic information

species Physcomitrella patens
transcript PP1S132_188V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208351199|gb|DC921534.1|DC921534
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|208390920|gb|DC945923.1|DC945923
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTNCTGTGAT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTT-CTGTGAT
EST: gi|67727919|gb|BJ978178.1|BJ978178
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162216577|gb|FC392474.1|FC392474
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67724253|gb|BJ974512.1|BJ974512
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162272287|gb|FC448991.1|FC448991
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67720348|gb|BJ970607.1|BJ970607
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTCCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162204805|gb|FC381162.1|FC381162
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67697351|gb|BJ957584.1|BJ957584
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162279681|gb|FC455394.1|FC455394
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162165859|gb|FC340936.1|FC340936
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|208382614|gb|DC923228.1|DC923228
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|208394052|gb|DC957133.1|DC957133
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162245361|gb|FC421263.1|FC421263
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162277016|gb|FC453738.1|FC453738
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCA
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCA
EST: gi|162279003|gb|FC454742.1|FC454742
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67725406|gb|BJ975665.1|BJ975665
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67726459|gb|BJ976718.1|BJ976718
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37828202|gb|BJ586214.1|BJ586214
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|22492714|gb|BU052637.1|BU052637
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37831558|gb|BJ589570.1|BJ589570
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|208395024|gb|DC920227.1|DC920227
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37822137|gb|BJ580203.1|BJ580203
EST:     GCGTCTGTACTCGANCACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|208394507|gb|DC953546.1|DC953546
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37826465|gb|BJ584477.1|BJ584477
EST:     GCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67723943|gb|BJ974202.1|BJ974202
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37832625|gb|BJ590637.1|BJ590637
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67724339|gb|BJ974598.1|BJ974598
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTC--GGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37822205|gb|BJ580271.1|BJ580271
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67720308|gb|BJ970567.1|BJ970567
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTCCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37822160|gb|BJ580226.1|BJ580226
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67720436|gb|BJ970695.1|BJ970695
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67723783|gb|BJ974042.1|BJ974042
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67727021|gb|BJ977280.1|BJ977280
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37845059|gb|BJ603067.1|BJ603067
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67725000|gb|BJ975259.1|BJ975259
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37835059|gb|BJ593071.1|BJ593071
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTAAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67726157|gb|BJ976416.1|BJ976416
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37833740|gb|BJ591752.1|BJ591752
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67726470|gb|BJ976729.1|BJ976729
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162238599|gb|FC418975.1|FC418975
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67727002|gb|BJ977261.1|BJ977261
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37831144|gb|BJ589156.1|BJ589156
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162252076|gb|FC428315.1|FC428315
EST:     CTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: CTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67726465|gb|BJ976724.1|BJ976724
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|22491718|gb|BU051641.1|BU051641
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|208395828|gb|DC920306.1|DC920306
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37841677|gb|BJ599685.1|BJ599685
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67723825|gb|BJ974084.1|BJ974084
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67720872|gb|BJ971131.1|BJ971131
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67720341|gb|BJ970600.1|BJ970600
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162224735|gb|FC401983.1|FC401983
EST:     AAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: AAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|22492715|gb|BU052638.1|BU052638
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37831811|gb|BJ589823.1|BJ589823
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGTTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37831064|gb|BJ589076.1|BJ589076
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|208399694|gb|DC920912.1|DC920912
EST:     GCGTCTNTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCANTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162225218|gb|FC401984.1|FC401984
EST:     AAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: AAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37832018|gb|BJ590030.1|BJ590030
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37851858|gb|BJ609866.1|BJ609866
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67720445|gb|BJ970704.1|BJ970704
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37828394|gb|BJ586406.1|BJ586406
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37850301|gb|BJ608309.1|BJ608309
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37853372|gb|BJ611380.1|BJ611380
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37820921|gb|BJ578987.1|BJ578987
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67727668|gb|BJ977927.1|BJ977927
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162244183|gb|FC423760.1|FC423760
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162244184|gb|FC423761.1|FC423761
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37824630|gb|BJ582696.1|BJ582696
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37830678|gb|BJ588690.1|BJ588690
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTAAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37821098|gb|BJ579164.1|BJ579164
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67728306|gb|BJ978565.1|BJ978565
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162279004|gb|FC454743.1|FC454743
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|7047049|gb|AW476943.1|AW476943
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATCTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67723934|gb|BJ974193.1|BJ974193
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162220344|gb|FC395725.1|FC395725
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37832244|gb|BJ590256.1|BJ590256
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37851182|gb|BJ609190.1|BJ609190
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67725134|gb|BJ975393.1|BJ975393
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|162277015|gb|FC453737.1|FC453737
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|37829150|gb|BJ587162.1|BJ587162
EST:     AAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: AAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
EST: gi|67725253|gb|BJ975512.1|BJ975512
EST:     GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCG                         GTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT
genomic: GCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 34

AATTCTCTCGATTTACTCCCACCCAGCCCAATGGTTTTGGATAACTGGAAGCGTCTGTACTCGAACACTAAGGCGAAGGATTTCCACTTGGCAATTAGCGgtgagtcatg ... cttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATTACAAGTACAATGATGAAAACCAAGTTACGTTTGTGACCATGAACAAGGT




<











<


<