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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGGTGTACCATGATCTTCTCGGTATGATGCAACACCCCCATTTCGTGCAGgtactaatctattcttacctcttggcaaaccccaacaactttggtgtgtagtgttgagagaagcagtctatcatcagctttaacttcaaagctagaacgtataatcgactcctcgtttgttgcttcgaattggatcatggttgtggaagtgttcatggctgatgtattcctggcgattgggatag

Basic information

species Physcomitrella patens
transcript PP1S130_272V6.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S130_272V6.4 (Physcomitrella patens), 5'ss of exon 6
lower sequence: AT2G46110.1 (Arabidopsis thaliana), 5'ss of exon 3
GTCTTGGTGTACCATGATCTTCTCGGTATGATGCAACACCCCCATTTCGTGCAGgta-----ctaatctattcttacctcttggcaaaccccaacaactttggt-gtgtagtgttgagagaagcagtctatcatcagctttaacttcaaagctagaacgtataatcgactcctcgtttgttgcttcgaattggatcatggttgtggaagtgttcatggctgatgtattcctggcgattgggatag
||  | || |||||||||||||| |||||||||||||| || |||   |   |||||     || |   | |  |   | | |  |  |     |   || | | ||    | |  | |       | | ||||   |||  | |||| ||                                                                                              
GTGCTAGTTTACCATGATCTTCTTGGTATGATGCAACATCCACATCATGCCAAGgtaaaatcctgacacaattattgttttcgaaacgcattctcttgttcgttcgttcgttatcaacatgcttcttgtttcatgctcttatatttcacag----------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162177510|gb|FC353771.1|FC353771
EST:     CGGTATGATGCAACACCCCCATTTCGTGCAG                         GTCACACCGAAATTCTCGAAGCAGTACGCAAGTCTAGGGAACGTGATCAAT
genomic: CGGTATGATGCAACACCCCCATTTCGTGCAGgtactaatct ... attgggatagGTCACACCGAAATTCTCGAAGCAGTACGCAAGTCTAGGGAACGTGATCAAT
EST: gi|208363937|gb|DC950341.1|DC950341
EST:     GGTGTACCATGATCTTTCTCGGTATGATGCAACACCCCCATTTCGTGCAG                         GTCACACCGAAATTCTCGAAGCAGTACGCAAGTCTAGGGAACGTGATCAAT
genomic: GGTGTACCATGATC-TTCTCGGTATGATGCAACACCCCCATTTCGTGCAGgtactaatct ... attgggatagGTCACACCGAAATTCTCGAAGCAGTACGCAAGTCTAGGGAACGTGATCAAT