1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAGGTCTCAATAGAGGAAGGAGACGCCAAGGCCAAGGAATTACAAGTCATGTTCATCGAAACAAGTTCTAAGGCTGGATTTAACATCAAGgtgaaaataaacttgaatgttcattttctatttctttcgttactgttaggtgtatcggctttctatggtgtccattgtttaattgatgatgtataccttgtatgagttgatataaccttgatccttttttacgcag
species | Physcomitrella patens |
transcript | PP1S12_267V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACAAGTCATGTTCATCGAAACAAGTTCTAAGGCTGGATTTAACATCAAG GCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCTEST: gi|37840729|gb|BJ598737.1|BJ598737
genomic: TACAAGTCATGTTCATCGAAACAAGTTCTAAGGCTGGATTTAACATCAAGgtgaaaataa ... ttttacgcagGCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCT
EST: TACAAGTCATGTTCATCGAAACAAGTTCTAAGGCTGGATTTAACATCAAG GCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCTEST: gi|37840045|gb|BJ598053.1|BJ598053
genomic: TACAAGTCATGTTCATCGAAACAAGTTCTAAGGCTGGATTTAACATCAAGgtgaaaataa ... ttttacgcagGCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCT
EST: CTGGATTTAACATCAAG GCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCTEST: gi|37840469|gb|BJ598477.1|BJ598477
genomic: CTGGATTTAACATCAAGgtgaaaataa ... ttttacgcagGCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCT
EST: TACAAGTCATGTTCATCGAAACAAGTTCTAAGGCTGGATTTAACATCAAG GCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCTEST: gi|162197426|gb|FC372804.1|FC372804
genomic: TACAAGTCATGTTCATCGAAACAAGTTCTAAGGCTGGATTTAACATCAAGgtgaaaataa ... ttttacgcagGCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCT
EST: GGCTGGATTTAACATCAAG GCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCTEST: gi|162171599|gb|FC347540.1|FC347540
genomic: GGCTGGATTTAACATCAAGgtgaaaataa ... ttttacgcagGCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCT
EST: GCTGGATTTAACATCAAG GCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCTEST: gi|208368934|gb|DC947492.1|DC947492
genomic: GCTGGATTTAACATCAAGgtgaaaataa ... ttttacgcagGCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCT
EST: TAAGGCTGGATTTAACATCAAG GCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCTEST: gi|37847950|gb|BJ605958.1|BJ605958
genomic: TAAGGCTGGATTTAACATCAAGgtgaaaataa ... ttttacgcagGCTCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATCT
EST: TACAAGTCATGTTCATCGAAACAAGTTCTAAGGCTGGATTTAACATCAAG GCNNNNNNNCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATC
genomic: TACAAGTCATGTTCATCGAAACAAGTTCTAAGGCTGGATTTAACATCAAGgtgaaaataa ... ttttacgcagGC-TCTTTTCCGCAAAATTGCCGTAGCGCTGCCTGGAATGGAGGCATTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGGTCTCAATAGAGGAAGGAGACGCCAAGGCCAAGGAATTACAAGTCATGTTCATCGAAACAAGTTCTAAGGCTGGATTTAACATCAAGgtgaaaataaacttgaatgttcattttctatttctttcgttactgttaggtgtatcggctttctatggtgtccattgtttaattgatgatgtataccttgtatgagttgatataaccttgatccttttttacgcag
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