1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAGAAACAGTGTCGCTCTTGAAGAGTGAAGTTAAGAGCCAGGAAAGGCATGTAAAGACGCTCAAGAGGAGATCATTATGGGCTAAAATTCTAGAAGAGgtaacaatttagtacttcatagcaatcacttgtcgataaaaacttctaaagtacatcgtcattaggactgtcagtcggtatttcactgttgcatcgttcctggtgttgatcgtttgccgtgcaagtttaaactctaaatgcgaatgtttcag
species | Physcomitrella patens |
transcript | PP1S126_154V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGTAAAGACGCTCAAGAGGAGATCATTATGGGCTAAAATTCTAGAAGAG GTCATGGAACAATEST: gi|162167371|gb|FC343074.1|FC343074
genomic: ATGTAAAGACGCTCAAGAGGAGATCATTATGGGCTAAAATTCTAGAAGAGgtaacaattt ... aatgtttcagGTCATGGAACAAT
EST: ATGTAAAGACGCTCAAGAGGAGATCATTATGGGCTAAAATTCTAGAAGAG GTCATGGAACAATTGGTGGATATTGTATATTATCTTTACCAAGAAATCAAT
genomic: ATGTAAAGACGCTCAAGAGGAGATCATTATGGGCTAAAATTCTAGAAGAGgtaacaattt ... aatgtttcagGTCATGGAACAATTGGTGGATATTGTATATTATCTTTACCAAGAAATCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAAACAGTGTCGCTCTTGAAGAGTGAAGTTAAGAGCCAGGAAAGGCATGTAAAGACGCTCAAGAGGAGATCATTATGGGCTAAAATTCTAGAAGAGgtaacaatttagtacttcatagcaatcacttgtcgataaaaacttctaaagtacatcgtcattaggactgtcagtcggtatttcactgttgcatcgttcctggtgttgatcgtttgccgtgcaagtttaaactctaaatgcgaatgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA