1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AACTTTGCTGCGTATGATTATGGGGATGGAGGAACCCACTTCAGGTGAAGTTGCACTTGGAGAACATCGCGTTGTATTAAACTACTTCGAGCAGAACCAGgttcgttttctcttcttctgtgagtcttcgtttattgtttattttttgtgacaaagaaagcgtttgcaacagggttctttcatttcaacgatgaagtcgtggctgctgttaagaatatatgaaaagtttattctctaaaaaaaaaatgttatgcaacag
species | Physcomitrella patens |
transcript | PP1S125_77V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGCACTTGGAGAACATCGCGTTGTATTAAACTACTTCGAGCAGAACCAG GCAGAGGCGCTGGATCTGGAAAAAACCGTCCTTCAGACTGTGGAACAGGCAEST: gi|162157390|gb|FC333180.1|FC333180
genomic: TTGCACTTGGAGAACATCGCGTTGTATTAAACTACTTCGAGCAGAACCAGgttcgttttc ... tatgcaacagGCAGAGGCGCTGGATCTGGAAAAAACCGTCCTTCAGACTGTGGAACAGGCA
EST: TTGCACTTGGAGAACATCGCGTTGTATTAAACTACTTCGAGCAGAACCAG GCAGAGGCGCTGGATCTGGAAAAAACCGTCCTTCAGACTGTGGAACAGGCA
genomic: TTGCACTTGGAGAACATCGCGTTGTATTAAACTACTTCGAGCAGAACCAGgttcgttttc ... tatgcaacagGCAGAGGCGCTGGATCTGGAAAAAACCGTCCTTCAGACTGTGGAACAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTTTGCTGCGTATGATTATGGGGATGGAGGAACCCACTTCAGGTGAAGTTGCACTTGGAGAACATCGCGTTGTATTAAACTACTTCGAGCAGAACCAGgttcgttttctcttcttctgtgagtcttcgtttattgtttattttttgtgacaaagaaagcgtttgcaacagggttctttcatttcaacgatgaagtcgtggctgctgttaagaatatatgaaaagtttattctctaaaaaaaaaatgttatgcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG