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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGAACCTGATCGGAGATGTCAAGGGAAAGGTAGCAGTTATGCTTGATGATATGATTGACACTGCTGgtaagcctttccaccgtaattctatgttccttaaagaagttgagaaatgaattatgagaacacgtcttgtactattcattaccatgtattaccatgtaga...

Basic information

species Physcomitrella patens
transcript PP1S123_105V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S123_105V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA07G12660.1 (Glycine max), 5'ss of exon 6
GTGATGAACCTGATCGGAGATGTCAAGGGAAAGGTAGCAGTTATGCTTGATGATATGATTGACACTGCTGgtaagcctttccaccgtaattctatgttccttaaagaagttgagaaatgaattatgagaacacgtcttgtactattcattaccatgtattaccatgtaga-
||||||||  |||| || ||||| | ||||||||||||||||||| ||||||| |||||||| ||||||||||||  | |  |      ||  |||| |    | ||   ||| |  |    | |||  | |       |   |||  |  |     | | |    |    
GTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGgtaagtttgtgtaaaactcttg-atgtgctagtatgataatgatagttcgtctctgaccatataatcacttagattagtccctcaagacttctgcatttgc

upper sequence: PP1S123_105V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA03G24280.2 (Glycine max), 5'ss of exon 6
GTGATGAACCTGATCGGAGATGTCAAGGGAAAGGTAGCAGTTATGCTTGATGATATGATTGACACTGCTGgtaagcctttccaccgtaattctatgttccttaaagaagt--tgagaaatgaattatgagaacacgtcttgtactattcattaccatgtattaccatgtaga-
||||||||  |||| || ||||| | ||||||||||||||||||| ||||||| |||||||| ||||||||||||  | |  |    || |||   |   | |  | | |  ||| |  |    | |||  | |       |   |||  |  |     | |      |    
GTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGgtaagtttgtttaa---aactcttgatgtgtgagtgcaataatgatagtttgtctctgaccatataatcactttgattagtccctcaagacttgtgcatttgc

upper sequence: PP1S123_105V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA05G06110.1 (Glycine max), 5'ss of exon 6
GTGATGAACCTGATCGGAGATGTCAAGGGAAAGGTAGCAGTTATGCTTGATGATATGATTGACACTGCTGgtaagcctttccaccgtaattctatgttccttaaagaagttgagaaatgaattatgagaacacgtcttgtactattcattaccatgtattaccatgtaga---------
|||||||||||||| || ||||| || ||||| || || || ||| | ||||||||||||||||||||||||| ||| |          ||| |||  |  |    || ||||  |  || || |        || || || | |     ||   || ||  | ||  |          
GTGATGAACCTGATTGGTGATGTAAAAGGAAAAGTTGCTGTAATGGTGGATGATATGATTGACACTGCTGgtatgccatc---------ttcaatgcccaatttgaaatttgaagatagattttttttccagtgttttttattttgttgcacttggtgtttacttgctgggttaaagaa

upper sequence: PP1S123_105V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA17G16400.3 (Glycine max), 5'ss of exon 6
GTGATGAACCTGATCGGAGATGTCAAGGGAAAGGTAGCAGTTATGCTTGATGATATGATTGACACTGCTGgtaagcctttccaccgtaattctatgttc-cttaaagaagttgagaaatgaattatgagaacacgtcttgtactattcattaccatgtattaccatgtaga-
|||||||||||||| || ||||| || ||||| || || || ||| | ||||||||||| ||||||||||||| ||| |  |  | |  | | || |   |||  |  ||        ||   | |||      |    ||  |          | | | |    |  ||| 
GTGATGAACCTGATTGGTGATGTAAAAGGAAAAGTTGCTGTAATGGTAGATGATATGATCGACACTGCTGgtatgccat--cgtcattgtccaatttgaactttgaagagagatattttgttctgtgattttttgcacagtgtttgctgggttgaagaaatctagttaagaa