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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGGTGACGCCTGAAAGCGTCATTTATAGTTACGGCACTGTTCTACTGGATCTGTTGAGTGGGAAGCACATACCTCCGAGCCATgtaagtagtcattgtagcagtccctatcctcgtattatttggtgtgatctatgtagaactgggaacgtggttgtctttgaaacactgtcaaaggtcttatggagtttgtggccttgttgagtgtaaaatgttcgattgttgtgatgcag

Basic information

species Physcomitrella patens
transcript PP1S122_66V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S122_66V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: LOC_Os10g42110.1 (Oryza sativa), 5'ss of exon 6
GAAGGGTGACGCCTGAAAGCGTCATTTATAGTTACGGCACTGTTCTACTGGATCTGTTGAGTGGGAAGCACATACCTCCGAGCCATgtaagtagtcattgtagcagtccctatcctcgtattatttggtgtgatctatgtagaactgggaacgtggttgtctttgaaacactgtcaaaggtcttatggagtttgtggccttgttgagtgtaaaatgttcgattgttgtgatgcag
| || || |   | || || || || ||||| || || || |||||  ||||||| ||||||||||||||||||||||| ||||||||| |    | | ||   | ||| ||   |  |            ||  ||| || | | | |    |  || || ||       | ||   | |   |  |  | |||                                        
GCAGAGTCATCGCCGAGAGTGTGATATATAGCTATGGAACAGTTCTTTTGGATCTTTTGAGTGGGAAGCACATACCTCCTAGCCATgtatg----cttcgtttaaatccttacttttct---------caagaaatatatatatcagcgcttctccttatcattactctcatatcctggataacactgcatctgtattt------------------------------------

upper sequence: PP1S122_66V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ23298 (Selaginella moellendorffii), 5'ss of exon 5
GAAGGGTGACGCCTGAAAGCGTCATTTATAGTTACGGCACTGTTCTACTGGATCTGTTGAGTGGGAAGCACATACCTCCGAGCCATgtaagtagtcattgtagcagtccctatcctcgtattatttggtgtgatctatgtagaactgggaacgtggttgtctttgaaacactgtcaaaggtcttatggagtttgtggccttgttgagtgtaaaatgttcgattgttgtgatgcag
| || || || || || || || ||||||||||| || ||||||||  |||||||  | || ||||||||||| ||||| ||||| ||||||  |     |   ||  ||| |   | | | | || ||     || ||         |   |  |                                                                               
GTAGAGTAACACCCGAGAGTGTTATTTATAGTTATGGTACTGTTCTCTTGGATCTTCTTAGCGGGAAGCACATTCCTCCAAGCCACgtaagtgat-----tcaaagctcctcttagcttgtgagtttgta-atcctgtgcttcttcatgtgtgcag-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162220252|gb|FC396296.1|FC396296
EST:     GCACTGTTCTACTGGATCTGTTGAGTGGGAAGCACATACCTCCGAGCCAT                         GCCTTAGACTTAATTCGC
genomic: GCACTGTTCTACTGGATCTGTTGAGTGGGAAGCACATACCTCCGAGCCATgtaagtagtc ... tgtgatgcagGCCTTAGACTTAATTCGC