1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTGCATGATCCGAGCAAGGCAGTGGGATATGTGGGAGCTGCCTTGAGCAGCACAATGGTCCGTTTTTTTAAGAAAGATGACGACACGTGGGATACGCAGgtgattcactacaccttcgcatcccaaatcaatgtctgcactgtttgttcttctttagatcatctggcatgtcttatcacattcacgcatttgacaaccgcctaacactgtcctataatatggctttccatgccag
species | Physcomitrella patens |
transcript | PP1S11_387V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCACAATGGTCCGNNNNNNNAAGAAAGATGACGACACGTGGGATACGCAG GTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAAEST: gi|162174753|gb|FC352169.1|FC352169
genomic: GCACAATGGTCCGTTTTTTTAAGAAAGATGACGACACGTGGGATACGCAGgtgattcact ... tccatgccagGTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAA
EST: GCACAATGGTCCGNNNNNNNAAGAAAGATGACGACACGTGGGATACGCAG GTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAAEST: gi|162151131|gb|FC327650.1|FC327650
genomic: GCACAATGGTCCGTTTTTTTAAGAAAGATGACGACACGTGGGATACGCAGgtgattcact ... tccatgccagGTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAA
EST: GAAAGATGACGACACGTGGGATACGCAG GTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAAEST: gi|162212622|gb|FC389014.1|FC389014
genomic: GAAAGATGACGACACGTGGGATACGCAGgtgattcact ... tccatgccagGTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAA
EST: AAGAAAGATGACGACACGTGGGATACGCAG GTTGCCGTAACTGTGCNTGCATTGAAGGTGCGAAACTGGATATTGCCAGAAEST: gi|162189384|gb|FC366542.1|FC366542
genomic: AAGAAAGATGACGACACGTGGGATACGCAGgtgattcact ... tccatgccagGTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAA
EST: GCACAATGGTCCGNNNNNNNAAGAAAGATGACGACACGTGGGATACGCAG GTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAAEST: gi|208353106|gb|DC921850.1|DC921850
genomic: GCACAATGGTCCGTTTTTTTAAGAAAGATGACGACACGTGGGATACGCAGgtgattcact ... tccatgccagGTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAA
EST: GATGACGACACGTGGGATACGCAG GTTGCCGTAACTGTGCATNCATNGAAGGTGCGAAACTGGATATTGCCAGAAEST: gi|208384431|gb|DC928182.1|DC928182
genomic: GATGACGACACGTGGGATACGCAGgtgattcact ... tccatgccagGTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAA
EST: GCACAATGGTCCGNNNNNNNAAGAAAGATGACGACACGTGGGATACGCAG GTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAAEST: gi|37845309|gb|BJ603317.1|BJ603317
genomic: GCACAATGGTCCGTTTTTTTAAGAAAGATGACGACACGTGGGATACGCAGgtgattcact ... tccatgccagGTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAA
EST: GCACAATGGTCCGNNNNNNNAAGAAAGATGACGACACGTGGGATACGCAG GTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAAEST: gi|208374862|gb|DC956135.1|DC956135
genomic: GCACAATGGTCCGTTTTTTTAAGAAAGATGACGACACGTGGGATACGCAGgtgattcact ... tccatgccagGTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAA
EST: AAGATGACGACACGTGGGATACGCAG GTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAAEST: gi|208359243|gb|DC954166.1|DC954166
genomic: AAGATGACGACACGTGGGATACGCAGgtgattcact ... tccatgccagGTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAA
EST: CACAATGGTCCGNNNNNNNNAAGAAAGATGACGACACGTGGGATACGCAG GTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAAEST: gi|208382645|gb|DC919813.1|DC919813
genomic: CACAATGGTCCG-TTTTTTTAAGAAAGATGACGACACGTGGGATACGCAGgtgattcact ... tccatgccagGTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAA
EST: GCACAATGGTCCGNNNNNNNAAGAAAGATGACGGCACGTGGGATACGCAG GTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAA
genomic: GCACAATGGTCCGTTTTTTTAAGAAAGATGACGACACGTGGGATACGCAGgtgattcact ... tccatgccagGTTGCCGTAACTGTGCCTGCATTGAAGGTGCGAAACTGGATATTGCCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCATGATCCGAGCAAGGCAGTGGGATATGTGGGAGCTGCCTTGAGCAGCACAATGGTCCGTTTTTTTAAGAAAGATGACGACACGTGGGATACGCAGgtgattcactacaccttcgcatcccaaatcaatgtctgcactgtttgttcttctttagatcatctggcatgtcttatcacattcacgcatttgacaaccgcctaacactgtcctataatatggctttccatgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG