1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTCTACTTGACTTTCATGCTCACTGCTTGTGCTCTCTTCTCCAAGACCTGGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgactcaaggtttcccatcgcttcacggtactacccagataggacactgaagggataaaaaacttatgttcaactcagccacagccaatttgagttgctaataaatgatagattgttccttagtctcatgcttcattaacattaaatgacattggtcttccacag
species | Physcomitrella patens |
transcript | PP1S114_48V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|162180347|gb|FC355352.1|FC355352
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|162262091|gb|FC437379.1|FC437379
genomic: GTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|37839616|gb|BJ597624.1|BJ597624
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|37827136|gb|BJ585148.1|BJ585148
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|37844270|gb|BJ602278.1|BJ602278
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|37821807|gb|BJ579873.1|BJ579873
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|208368248|gb|DC951514.1|DC951514
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|37828143|gb|BJ586155.1|BJ586155
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|18334363|gb|BJ166380.1|BJ166380
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: CGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|162245019|gb|FC424977.1|FC424977
genomic: CGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|37839617|gb|BJ597625.1|BJ597625
genomic: GGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|18337271|gb|BJ169295.1|BJ169295
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|37850899|gb|BJ608907.1|BJ608907
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|37835924|gb|BJ593936.1|BJ593936
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|162179031|gb|FC356432.1|FC356432
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|18338761|gb|BJ170785.1|BJ170785
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|208373135|gb|DC945117.1|DC945117
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|162262090|gb|FC437378.1|FC437378
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|162166590|gb|FC343482.1|FC343482
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|208375228|gb|DC948753.1|DC948753
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|37822103|gb|BJ580169.1|BJ580169
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|208388528|gb|DC957082.1|DC957082
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|37826369|gb|BJ584381.1|BJ584381
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|162245018|gb|FC424976.1|FC424976
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|37835855|gb|BJ593867.1|BJ593867
genomic: GGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAGEST: gi|37827084|gb|BJ585096.1|BJ585096
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
EST: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAG GAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
genomic: GGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgact ... tcttccacagGAGCAACAAATGTTCATGCCAGGGCACCGTGAATCTAACCTCCAGAGGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTACTTGACTTTCATGCTCACTGCTTGTGCTCTCTTCTCCAAGACCTGGATCGAAGTGTCAGGATCGTCTGCACGAGACGTTGCCAAGCAGCTCAAGgtatgtgactcaaggtttcccatcgcttcacggtactacccagataggacactgaagggataaaaaacttatgttcaactcagccacagccaatttgagttgctaataaatgatagattgttccttagtctcatgcttcattaacattaaatgacattggtcttccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA