1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTTTACTCGAGCATGTCTCCTACAGAGAGGTTGCTATAAAGGGCCTATCTGTCATGGACATCACTGCCATCACACTTTGTCAAGAAAATCGCATTCCTGgtatcaactcattcatcatttcttattatattagtgacattacttcacaactaaaagaatttaagctgattgtattgttgtatagcttgatttattaagt...
species | Physcomitrella patens |
transcript | PP1S10_28V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGTCATGGACATCACTGCCATCACACTTTGTCAAGAAAATCGCATTCCTG TGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCCAAGGCACTAAGTGEST: gi|208380706|gb|DC919422.1|DC919422
genomic: TGTCATGGACATCACTGCCATCACACTTTGTCAAGAAAATCGCATTCCTGgtatcaactc ... ttgttggcagTGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCCAAGGCACTAAGTG
EST: TGTCATGGACATCACTGCCATCACACTTTGTCAAGAAAATCGCATTCCTG TGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCCAAGGCACTAAGTGEST: gi|162268876|gb|FC446010.1|FC446010
genomic: TGTCATGGACATCACTGCCATCACACTTTGTCAAGAAAATCGCATTCCTGgtatcaactc ... ttgttggcagTGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCCAAGGCACTAAGTG
EST: TGTCATGGACATCACTGCCATCACACTTTGTCAAGAAAATCGCATTCCTG TGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCCAAGGCACTAAGTG
genomic: TGTCATGGACATCACTGCCATCACACTTTGTCAAGAAAATCGCATTCCTGgtatcaactc ... ttgttggcagTGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCCAAGGCACTAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTACTCGAGCATGTCTCCTACAGAGAGGTTGCTATAAAGGGCCTATCTGTCATGGACATCACTGCCATCACACTTTGTCAAGAAAATCGCATTCCTGgtatcaactcattcatcatttcttattatattagtgacattacttcacaactaaaagaatttaagctgattgtattgttgtatagcttgatttattaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaat