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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAGgtacgacctgtcattcttttgagtctggaaatgcaatgtgggttcgtaggggagttgaaattttgatggaataaacatgtttgcacttatttgaagagta...

Basic information

species Physcomitrella patens
transcript PP1S101_67V6.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S101_67V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT4G23920.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAGgtacgacctgtc-----attcttttgagtctggaaatgc---aatgtgggttcgtaggggagttgaaattttgatggaataaacatgtttgcacttatttgaagagta
||  ||||||||||||||||||||||||| |||  ||| || |     ||||||   || ||    |  | || | | ||  ||| |   | ||     | |||||   || |  |    |   | | |  |    | |    | | ||   ||| |    | |                          
GTTAGAGATTACATTCATGTCATGGATTTAGCAGATGGACACATAGCTGCTCTGCGTAAGCTAG--ATGA-TCTCAAAATCAgtaaggattatcttaaaactctttgatgtttctactctcatcattattcgccattggtcaggcttaatacttgttatggtcag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208351996|gb|DC925805.1|DC925805
EST:     AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAG                         GATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
genomic: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAGgtacgacctg ... atttcggcagGATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
EST: gi|208388227|gb|DC956977.1|DC956977
EST:     AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAG                         GATGTGCAATTCACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
genomic: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAGgtacgacctg ... atttcggcagGATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
EST: gi|208382034|gb|DC919921.1|DC919921
EST:     AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAG                         GATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
genomic: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAGgtacgacctg ... atttcggcagGATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
EST: gi|162192001|gb|FC367214.1|FC367214
EST:     AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAG                         GATGTGCAATTTACAATTTG
genomic: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAGgtacgacctg ... atttcggcagGATGTGCAATTTACAATTTG
EST: gi|208363974|gb|DC947218.1|DC947218
EST:     AAGT-GTCATACGNAGGCTCTGGACAAACTCTTCACAACTCCCGACATAG                         GATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
genomic: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAGgtacgacctg ... atttcggcagGATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
EST: gi|208358116|gb|DC946744.1|DC946744
EST:     AGTGGTCATACGAAGGCTCTGGACCAACTTTTCACCAACTCCCGACATAG                         GATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
genomic: AGTGGTCATACGAAGGCTCTGGACAAACTCTTCA-CAACTCCCGACATAGgtacgacctg ... atttcggcagGATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA