1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGCAATCACTGTTAGAGGATATCAAAGATGTAAGGTGGGACAAAGTGGAGAAAGGTTTAAAAACGCTTTCCGGTCGTACTCACGCTGTGAAGgtcacaatcttgctattggactttctacacacttggtgatgtgatcatgcttacttgatattagtttgtttgtcgaagcatcattgtgacagtcgtgctg...
species | Physcomitrella patens |
transcript | PP1S101_118V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGTGGAGAAAGGTTTAAAAACGCTTTCCGGTCGTACTCACGCTGTGAAG CTGAAAAATCTTTCTGCTATGGAAGTTAATAGAATGCGAACATTCACTGTGEST: gi|208385567|gb|DC937112.1|DC937112
genomic: AAGTGGAGAAAGGTTTAAAAACGCTTTCCGGTCGTACTCACGCTGTGAAGgtcacaatct ... ttgtctacagCTGAAAAATCTTTCTGCTATGGAAGTTAATAGAATGCGAACATTCACTGTG
EST: AAGTGGAGAAAGGTTTAAAAACGCTTTCCGGTCGTACTCACGCTGTGAAG CTGAAAAATCTTTCTGCTATGGAAGTTAATAGAATGCGAACATTCACTGTGEST: gi|208354142|gb|DC957390.1|DC957390
genomic: AAGTGGAGAAAGGTTTAAAAACGCTTTCCGGTCGTACTCACGCTGTGAAGgtcacaatct ... ttgtctacagCTGAAAAATCTTTCTGCTATGGAAGTTAATAGAATGCGAACATTCACTGTG
EST: AAGTGGAGAAAGGTTTAAAAACGCTTTCCGGTCGTACTCACGCTGTGAAG CTGAAAAATCTTTCTGCTATGGAAGTTAATAGAATGCGAACATTCACTGTGEST: gi|208364061|gb|DC950381.1|DC950381
genomic: AAGTGGAGAAAGGTTTAAAAACGCTTTCCGGTCGTACTCACGCTGTGAAGgtcacaatct ... ttgtctacagCTGAAAAATCTTTCTGCTATGGAAGTTAATAGAATGCGAACATTCACTGTG
EST: AAGTGGAGAAAGGTTTAAAAACGCTTTCCGGTCGTACTCACGCTGTGAAG CTGAAAAATCTTTCTGCTATGGAAGTTAATAGAATGCGAACATTCACTGTG
genomic: AAGTGGAGAAAGGTTTAAAAACGCTTTCCGGTCGTACTCACGCTGTGAAGgtcacaatct ... ttgtctacagCTGAAAAATCTTTCTGCTATGGAAGTTAATAGAATGCGAACATTCACTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCAATCACTGTTAGAGGATATCAAAGATGTAAGGTGGGACAAAGTGGAGAAAGGTTTAAAAACGCTTTCCGGTCGTACTCACGCTGTGAAGgtcacaatcttgctattggactttctacacacttggtgatgtgatcatgcttacttgatattagtttgtttgtcgaagcatcattgtgacagtcgtgctg
- - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGAA