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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATTTAACCGCTGGGAAGCTAATGCATGATTTCAAATATCATGAAGGACAAGTCCAATGTCTGGACTTCCATCCTCACGAATTTCTTCTTGCTACAGgtaggctttctgtgctgctgttctggacgttttgaattgcctcaggatttgcagttatatctttctttgatatgcagatgctggttcaaacgttggtttg...

Basic information

species Physcomitrella patens
transcript PP1S9_241V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S9_241V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ26184 (Selaginella moellendorffii), 5'ss of exon 5
TGGGATTTAACCGCTGGGAAGCTAATGCATGATTTCAAATATCATGAAGGACAAGTCCAATGTCTGGACTTCCATCCTCACGAATTTCTTCTTGCTACAGgta-ggctttctgtgctgctgttctggacgttttgaattgcctcaggatttgcagttatatctttctttgatatgcagatgctggttcaaacgttggtttg
||||| || || ||||||||||| || |||||||| || || ||||| |  ||  | |   |||| |||||||||||||| ||||| |||||||| ||||||  ||||||  ||| |  |  |       ||   | ||||      |||| |||                                              
TGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTCTTGCGACAGgtttggctttacgtgatatttatactcctcttccaacttgc------attttcag----------------------------------------------

upper sequence: PP1S9_241V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ05569 (Selaginella moellendorffii), 5'ss of exon 6
TGGGATTTAACCGCTGGGAAGCTAATGCATGATTTCAAATATCATGAAGGACAAGTCCAATGTCTGGACTTCCATCCTCACGAATTTCTTCTTGCTACAGgta-ggctttctgtgctgctgttctggacgttttgaattgcctcaggatttgcagttatatctttctttgatatgcagatgctggttcaaacgttggtttg
||||| || || ||||||||||| || |||||||| || || ||||| |  ||  | |   |||| |||||||||||||| ||||| |||||||| ||||||  ||||||  ||| |  |  |       ||   |  |||      |||| |||                                              
TGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTCTTGCGACAGgtttggctttacgtgatatttatactcctcttccaacctgc------attttcag----------------------------------------------