1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTTTTTGAAGGAACCTCGGGTATCGATAACAAGCACACTACCATTGAGTTCACTGGAGAGgtaacttgattcttctcacatcttttccagtcctttatgtacttcacttaaatgcatccgactataattgattgtaacttactttgtatggcttgcttta...
species | Physcomitrella patens |
transcript | PP1S85_75V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAACCTCGGGTATCGATAACAAGCACACTACCATTGAGTTCACTGGAGAG GTGCTGAAAACACCAGTCTCGTTAGACATGCTGGGACGTATTTTCAATGEST: gi|67575005|gb|BJ947829.1|BJ947829
genomic: GAACCTCGGGTATCGATAACAAGCACACTACCATTGAGTTCACTGGAGAGgtaacttgat ... tgtggtttagGTGCTGAAAACACCAGTCTCGTTAGACATGCTGGGACGTATTTTCAATG
EST: GAACCTCGGGTATCGATAACAAGCACACTACCATTGAGTTCACTGGAGAG GTGCTGAAAACACCAGTCTCGTTAGACATGCTGGGACGTATTTTCAATGGTEST: gi|162190700|gb|FC367586.1|FC367586
genomic: GAACCTCGGGTATCGATAACAAGCACACTACCATTGAGTTCACTGGAGAGgtaacttgat ... tgtggtttagGTGCTGAAAACACCAGTCTCGTTAGACATGCTGGGACGTATTTTCAATGGT
EST: GAACCTCGGGTATCGATAACAAGCACACTACCATTGAGTTCACTGGAGAG GTGCTGAAAACACCAGTCTCGTTAGACATGCTGGGACGTATTTTCAATGGTEST: gi|18367548|gb|BJ199631.1|BJ199631
genomic: GAACCTCGGGTATCGATAACAAGCACACTACCATTGAGTTCACTGGAGAGgtaacttgat ... tgtggtttagGTGCTGAAAACACCAGTCTCGTTAGACATGCTGGGACGTATTTTCAATGGT
EST: GAACCTCGGGTATCGATAACAAGCACACTACCATTGAGTTCACTGGAGAG GTGCTGAAAACACCAGTCTCGTTAGACATGCTGGGACGTATTTTCAATGGT
genomic: GAACCTCGGGTATCGATAACAAGCACACTACCATTGAGTTCACTGGAGAGgtaacttgat ... tgtggtttagGTGCTGAAAACACCAGTCTCGTTAGACATGCTGGGACGTATTTTCAATGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTGAAGGAACCTCGGGTATCGATAACAAGCACACTACCATTGAGTTCACTGGAGAGgtaacttgattcttctcacatcttttccagtcctttatgtacttcacttaaatgcatccgactataattgattgtaacttactttgtatggcttgcttta
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA