1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGGTCCATTATCAGCATATTCGAGAGGGTCCTTCATCATTATGGAGTATATCGAAATGGGGTCATCTAGAGGAAATCAAgtatgtatgctccgcactgatttctttgtagaaccgcctgatcacttattttgttgagagagagctaatattgtgggtaaattgtcactttttgagtctgtttcag
species | Physcomitrella patens |
transcript | PP1S83_158V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTTCATCATTATGGAGTATATCGAAATGGGGGCATCTAGAGGAAATCAA GCAGAGCTTGGTAGGCAACTAGCAGEST: gi|208353856|gb|DC906544.1|DC906544
genomic: CCTTCATCATTATGGAGTATATCGAAATGGGGTCATCTAGAGGAAATCAAgtatgtatgc ... tctgtttcagGCAGAGCTTGGTAGGCAACTAGCAG
EST: CCTTCATCATTATGGAGTATATCNAAATGGGGTCATCTAGAGGAAATCAA GCAGAGCTTGGTAGGCAACTAGCAGAAATGCACAAGACGAGTTCATCAGAGEST: gi|18347323|gb|BJ179369.1|BJ179369
genomic: CCTTCATCATTATGGAGTATATCGAAATGGGGTCATCTAGAGGAAATCAAgtatgtatgc ... tctgtttcagGCAGAGCTTGGTAGGCAACTAGCAGAAATGCACAAGACGAGTTCATCAGAG
EST: CCTTCATCATTATGGAGTATATCGAAATGGGGTCATCTAGAGGAAATCAA GCAGAGCTTGGTAGGCAACTAGCAGAAATGCACAAGACGAGT
genomic: CCTTCATCATTATGGAGTATATCGAAATGGGGTCATCTAGAGGAAATCAAgtatgtatgc ... tctgtttcagGCAGAGCTTGGTAGGCAACTAGCAGAAATGCACAAGACGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGTCCATTATCAGCATATTCGAGAGGGTCCTTCATCATTATGGAGTATATCGAAATGGGGTCATCTAGAGGAAATCAAgtatgtatgctccgcactgatttctttgtagaaccgcctgatcacttattttgttgagagagagctaatattgtgggtaaattgtcactttttgagtctgtttcag
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