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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag

Basic information

species Physcomitrella patens
transcript PP1S81_198V6.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os03g59060.1 (Oryza sativa), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatc--caattggaccaattttatgatttcactctattttgaa-atttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|| ||||| || || ||||| |||||||||||||| |||||||||||||||||||| ||||||||||  || || ||  |  | | | |  |||   | |  |||  || ||||   | |  |  | | |||||   | |   |  |  ||      |   ||   |||||||||  |  |||| | |  ||      || | |                                                                
TGCCCAGATACAAACTACTTGTTTATGGGAGATTACGTGGATCGTGGTTATTATTCTGTTGAAACTGTCACGgtaagagtagtttaagcatcaacatggctgatt--atcattttgttttggtgggcacatttaacttacaaatacttctaa-----aattaatagttcttgatt-ttaatgtattcctttaca----aaaacag---------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os10g27050.1 (Oryza sativa), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || ||||| || ||||||||||||||||| |||||||| || ||||| ||||| |||| |||||| ||| | ||    |   |||       |  |   |||| | |  |  || ||   | |  | ||| || |  | | ||||  ||| |     |||    || |  |                                                                                     
TGTCCAGATACAAATTATTTGTTTATGGGAGATTATGTAGATCGTGGCTACTATTCTGTTGAGACTGTTACAgtaagtctcctgagttttgattttgtt--tgctgaaattttaattgaagttcaacaatgtcatgcttatggtt-tgtttgtttacgacg----tttggcc-ctaccat-------------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os03g07150.1 (Oryza sativa), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|| ||||| || ||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||| ||| || ||  ||  | ||   | ||        | | ||||     | ||| |  |  ||||       |||   | |     | | |  || ||| ||  ||  |  ||  |                                                                                   
TGCCCAGATACTAATTATTTATTTATGGGGGATTATGTGGATCGTGGCTATTACTCTGTTGAGACTGTTACTgtaagagttaacctacttattt--------tctttgatgagtatttatatacagttttacagaagctgtcaagtttcacat-acc--agatttatttgttcttattggcca----------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G420926_T01 (Zea mays), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtatt---ctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatg-tgttagcgaa-ggtttcttgattgct---gctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||  || || || | |   |   |||     |   |||| ||  |  | |  ||   |||  | | || || |  ||    |   ||| || | |  || ||     |||||  |   | | | |||  | |   | |        ||  | |   | |  |   | |  ||||   | |  | ||   |  | | || ||    |||
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTAGATCGTGGCTACTATTCTGTTGAGACTGTCACTgtaagaaattaaccactatttttctttgccaagttagttttctttcttgttttgcagaattgttttgtttcacatataatggtgctggaaaaaggaaatctgattcatcaagttatgctttaacatatttcttatggtcttaatctca-gttcata-ttatgagtaagcattatatatttatat-tatgttcttactccag

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G420926_T03 (Zea mays), 5'ss of exon 3
----------------------------TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtatt---ctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatg-tgttagcgaa-ggtttcttgattgct---gctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
                            |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||  || || || | |   |   |||     |   |||| ||  |  | |  ||   |||  | | || || |  ||    |   ||| || | |  || ||     |||||  |   | | | |||  | |   | |        ||  | |   | |  |   | |  ||||   | |  | ||   |  | | || ||    |||
TGCCAGTTTTATTCTCTTCTGTTTCCAGTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTAGATCGTGGCTACTATTCTGTTGAGACTGTCACTgtaagaaattaaccactatttttctttgccaagttagttttctttcttgttttgcagaattgttttgtttcacatataatggtgctggaaaaaggaaatctgattcatcaagttatgctttaacatatttcttatggtcttaatctca-gttcata-ttatgagtaagcattatatatttatat-tatgttcttactccag

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G112793_T01 (Zea mays), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| ||||| ||||  || || ||             || |  |||  |  |        ||| | |||   || ||| | | ||| ||||| | ||      || |  | ||||| ||     |||| ||      |||| || |   |                                                              
TGTCCAGACACCAATTACTTATTTATGGGGGATTATGTAGATCGTGGCTACTATTCTGTTGAGACTGTCACTgtaag-------------aaattaaccgctgct-------tactttctttatcaagttagttttctt-tgttgctttg------cggaattgtcttgtttcaca-tgtaattgt----gctggaaaaaggaa-------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G382077_T01 (Zea mays), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgag-tattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || ||||| || |||||||| ||||||||||||||||| ||||| || ||||| || |  || || || | |   || ||  | ||| |  | |||| |  ||| ||| | | ||||   | ||         |     ||      |   || |||| |  | ||||||||                                                                                     
TGTCCAGATACAAATTATTTGTTTATGGGTGATTATGTGGATCGTGGCTATTACTCTGTTGAGACAGTAACGgtaagatgtagcctgat--agttgcattagttttttt-tttgactttttcttgatggtaataga----aggccaacattcccatgtttagttttcat--tcgctgctgt-------------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G108355_T01 (Zea mays), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || || ||||| ||||||||||||||||| || |||||||| || || || |||||||  ||||| ||| |   || |      |         |||||  ||  | | ||    | ||| || || ||  |  ||||       ||   || ||   |  |     || || |                                                                                  
TGTCCAGATACGAACTACTTGTTTATGGGAGATTATGTTGACCGTGGTTACTACTCTGTCGAAACTGTCACAgtaagtgtagactcacatggct---------ttatg--ttagcaccatcagcatattcat-ctactcatagtggtcatgagcagtatagtttgtgtagtgtgcactatattg---------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA05G28790.2 (Glycine max), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattgga--ccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || |||||||| ||||||||||||||||| |||||||| |||||||| |||||||||| ||| || | |||| | || |    || ||   ||  ||  |  |  || | | | |||  ||||||| |   |  | || |||| | |      | |    || |                                                                                              
TGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTTGATCGTGGCTATTATTCTGTTGAAACTGTTACGgtaaatatt-tattgtttttttagaattcagcttcgttctgacatttt-tattgttatttattttttataagctgttatgggattatttggttaggatgttc---------------------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA02G26650.1 (Glycine max), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||  ||||| |||| | |       || | |   |||||| ||    |    |  |||| | |||| |       | |   | |  |  |||     |||  || ||  |                                                                                          
TGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACAgtaagtactttaaagataaacttgtggaattttctg-caccttgttgctttgtagtttagtagttcgttctccat-tccgggagcttgcattttatg-ttatt------------------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA09G15900.1 (Glycine max), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgct-gtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||  ||||| ||||       ||  ||   ||  || ||   || ||  ||  |  |    ||| ||  |  |||   ||   | |  ||||        ||     |  ||| ||| ||                                                                                 
TGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACAgtaagtac------attaaa---gataaacttgtggaattttctgcacct----attaatagttgttgctatgtggtttagtagcttgttcccctctccgggagcttgtattt---------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA09G15900.2 (Glycine max), 5'ss of exon 3
----------------------------TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgct-gtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
                            |||||||| || |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||  ||||| ||||       ||  ||   ||  || ||   || ||  ||  |  |    ||| ||  |  |||   ||   | |  ||||        ||     |  ||| ||| ||                                                                                 
AATCTAAGAATATTTGTTTTGTTTGCAGTGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACAgtaagtac------attaaa---gataaacttgtggaattttctgcacct----attaatagttgttgctatgtggtttagtagcttgttcccctctccgggagcttgtattt---------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA08G11940.1 (Glycine max), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgat-ttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || |||||||| ||||||||||||||||| |||||||| |||||||| || ||||||| ||| || | |||    | ||   | |  |  | |||| || | ||||   |  ||   ||  | || |  || | ||  ||| | |||       |     ||||                                                                                             
TGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTTGATCGTGGCTATTATTCTGTCGAAACTGTTACGgtaaatatgaaat-attttacttaattatttttttggtattcaacttggttctgaaaatgtttttattttatt--tattttttacaagtcatcatgggattat-------------------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA19G39170.1 (Glycine max), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtatt-ctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || || ||||| |||||||| ||||||||||| || ||||||||||||||||| ||||   | || ||||   ||   | | |  |  ||  |||| ||  ||||  |   ||| ||   ||||| |       || ||   ||||  |        |   |   |||                                                                                         
TGTCCAGATACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTATCGgtaagtacaactacaaccaagataaacttatttgat--tttctttgcctttggatggttattttttgaaaatttgt---tgttctctctctgccccaaacctctg-----------------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA03G36510.1 (Glycine max), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattt-tatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || || ||||| |||||||| ||||||||||| || ||||||||||||||||| ||||   |||| ||||   |   | ||||   ||  || || | ||||||   | |    ||   ||| ||     ||||||| |     ||  |  |    ||  |  |                                                                                             
TGTCCAGATACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTGTCAgtaagtacaattacaaccaa---gataaacttatttgattttcttttcggatgttttttttttaaaatgtgttgttcctctttgccccaaacctccggggtat-------------------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT2G42500.3 (Arabidopsis thaliana), 5'ss of exon 4
-----------------------TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtat-tctcttatccaattggaccaattttatg-attt-----cactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtg--ttctgacatttatttttctggcag
                       || || || ||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||||| ||| ||  | |  |    |||  |      |   ||||||  ||||      |  ||  || | ||   | ||    | | ||  ||| || || | |       || | |       || ||   |   ||  |  ||  ||   ||||| |  |||| || |     ||  | |      ||||     ||||| |  |  |||
TATTAATTTTCTCTTTTTTGCAGTGCCCTGATACCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGTTATTATTCTGTTGAAACTGTTACGgtacgaagatgaaatatttagacttcctttttttattcatttaagagtaggctgattggcaagccagtcattgtctttttatat-tggtaacaagataccattaacttgacggatattttttt---ctttacaatgtatatattttggg--tgtgactatgaagtatgctgatactgtttctctttcttattctctttccag

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT2G42500.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtat-tctcttatccaattggaccaattttatg-attt-----cactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtg--ttctgacatttatttttctggcag
|| || || ||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||||| ||| ||  | |  |    |||  |      |   ||||||  ||||      |  ||  || | ||   | ||    | | ||  ||| || || | |       || | |       || ||   |   ||  |  ||  ||   ||||| |  |||| || |     ||  | |      ||||     ||||| |  |  |||
TGCCCTGATACCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGTTATTATTCTGTTGAAACTGTTACGgtacgaagatgaaatatttagacttcctttttttattcatttaagagtaggctgattggcaagccagtcattgtctttttatat-tggtaacaagataccattaacttgacggatattttttt---ctttacaatgtatatattttggg--tgtgactatgaagtatgctgatactgtttctctttcttattctctttccag

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: Vv13s0156g00060.t01 (Vitis vinifera), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || |||||||| || ||||||||||||||||||||||| |||||||||||||||||||  || || |||||         || |||   || | | ||  |      ||||  |  ||   |  || |   | | |  |||        ||  ||  || | |        || |                                                                                 
TGTCCAGATACGAATTACTTGTTCATGGGAGATTATGTGGATCGTGGGTATTATTCAGTTGAAACTGTCACGgtaagtat---------cagttgagtcattgtaattttcaactcctatcatagaagaaaaacttcagat-tagacatgcac--atcaattttgtttaactttcaaaacacat---------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: Vv06s0004g00830.t01 (Vitis vinifera), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcact--ctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || |||||||| ||||||||||||||||| || |||||||||||||| ||||||||||  || || ||||     |        |   ||||| ||||  |   | |   || |||  ||   |  ||    |||     ||   |   | ||       | |||||  ||| | | ||                                                                               
TGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTATTATTCTGTTGAAACTGTCACGgtaagtaggagtt------gctatgccaatattatcttggaaatgattaatttagaa---aagctttcggtgggaacatacatggtcaaa-------taattgcaactggattacc-------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ32273 (Selaginella moellendorffii), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || || ||||| |||||||| ||||||||||||||||| || || || || || ||||| || ||||||  ||   |   || ||  |   |   |         ||   || ||  ||  |                                                                                                                                      
TGTCCAGATACAAACTACTTGTTTATGGGCGATTATGTGGATCGTGGGTACTACTCCGTCGAGACTGCAACTgtgagttctcctcttgtcatttacattcaagctgactcggttcttcgttctgctatgcag-------------------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ16562 (Selaginella moellendorffii), 5'ss of exon 4
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag
|||||||| || || ||||| |||||||| ||||||||||||||||| || || || || || ||||| || ||||||  ||   |   || ||  |   |   |         ||   || ||  ||  |                                                                                                                                      
TGTCCAGATACAAACTACTTGTTTATGGGCGATTATGTGGATCGTGGGTACTACTCCGTCGAGACTGCAACTgtgagttctcctcttgtcatttacatgcaagctgactcggttcttcgttctgctatgcag-------------------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67575300|gb|BJ948124.1|BJ948124
EST:     TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|18374787|gb|BJ206365.1|BJ206365
EST:     TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|208386240|gb|DC952953.1|DC952953
EST:     TTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|208385457|gb|DC956655.1|DC956655
EST:     TTATGGGAGATTATGTGGATCGTGGTCATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|18372424|gb|BJ204026.1|BJ204026
EST:     TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|100367133|gb|BY984820.1|BY984820
EST:     TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|100403358|gb|BY991163.1|BY991163
EST:     TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|208364480|gb|DC930870.1|DC930870
EST:     TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|208359936|gb|DC938957.1|DC938957
EST:     TTATGGGAGATTATGTGGATCGTAGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|100371567|gb|BY968043.1|BY968043
EST:     TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|208363782|gb|DC943239.1|DC943239
EST:     TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|162157762|gb|FC335476.1|FC335476
EST:     TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|162155831|gb|FC331860.1|FC331860
EST:     TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|208358426|gb|DC930558.1|DC930558
EST:     TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
EST: gi|162169399|gb|FC345755.1|FC345755
EST:     TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA                         CTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT
genomic: TTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattc ... tttctggcagCTGCTAGTGGCTTTAAAAGTACGATATCCTGATCGTATTACCATTCTGCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACAgtgagtattctcttatccaattggaccaattttatgatttcactctattttgaaatttattctccttgtgttggtatgtgttagcgaaggtttcttgattgctgctgtacttccataagctgcaagataaattggttttgcgcttgtggctctacgtaatagtaacgtgttctgacatttatttttctggcag

- - - - - - - - - - - - -  GGAGAT