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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCAGGACCTCGTGATAAGgttcttaatatccattactcttctcttgatttttaggtaatttgaatacataccaagctaatttactgtcaagaagtgcctttttaagtgacttccacttttgacatttcgtgacactctttccttgtccgcag

Basic information

species Physcomitrella patens
transcript PP1S81_165V6.4
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162199151|gb|FC374597.1|FC374597
EST:     ACACTGCTGGGGATGGTGTTCATTTCAGACGTGCAGGACCTCGTGATAAG                         ATATACTTCCAGTCGGAGGATGTGAAGGCATGCATTGTAACTTGTGGAGGA
genomic: ACACTGCTGGGGATGGTGTTCATTTCAGACGTGCAGGACCTCGTGATAAGgttcttaata ... ttgtccgcagATATACTTCCAGTCGGAGGATGTGAAGGCATGCATTGTAACTTGTGGAGGA
EST: gi|67569904|gb|BJ942728.1|BJ942728
EST:     ACACTGCTGGGGATGGTGTTCATTTCAGACGTGCAGGACCTCGTGATAAG                         ATATACTTCCAGTCGGAGGATGTGAAGGCATGCATTGTAACTTGTGGAGGA
genomic: ACACTGCTGGGGATGGTGTTCATTTCAGACGTGCAGGACCTCGTGATAAGgttcttaata ... ttgtccgcagATATACTTCCAGTCGGAGGATGTGAAGGCATGCATTGTAACTTGTGGAGGA
EST: gi|18361584|gb|BJ193650.1|BJ193650
EST:     ACACTGCTGGGGATGGTGTTCATTTCAGACGTGCAGGACCTCGTGATAAG                         ATATACTTCCAGTCGGAGGATGTGAAGGCATGCATTGTAACTTGTGGAGGA
genomic: ACACTGCTGGGGATGGTGTTCATTTCAGACGTGCAGGACCTCGTGATAAGgttcttaata ... ttgtccgcagATATACTTCCAGTCGGAGGATGTGAAGGCATGCATTGTAACTTGTGGAGGA