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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAACTCTGCCATCACCTCGCCTGCGCATGGGGAGGCGCTTCCAGTGAATTTCTCAACGCTTCAGGAGTCTTACATAGTGAAAGGATATGCCTATAGCGgtaattgaatctccttctcagtgtttttaatcccgtcattagagtcaaagatggacatgtggtcatggcgttggcttcatatcttcacaggttcaagaga...

Basic information

species Physcomitrella patens
transcript PP1S79_76V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18369179|gb|BJ201264.1|BJ201264
EST:     TTTCTCAACGCTTCAGGAGTCTTACATAGTGAAAGGATATGCCTATAGCG                         GTGGCGGCCGGAAAGTGACGA
genomic: TTTCTCAACGCTTCAGGAGTCTTACATAGTGAAAGGATATGCCTATAGCGgtaattgaat ... tgatggacagGTGGCGGCCGGAAAGTGACGA
EST: gi|18361546|gb|BJ193612.1|BJ193612
EST:     TTTCTCAACGCTTCAGGAGTCTTACATAGTGAAAGGATATGCCTATAGCG                         GTGGCGGCCGGAAAGTGACGAGAGTCGAGGTCTCGCTTAACGATGGGAAGT
genomic: TTTCTCAACGCTTCAGGAGTCTTACATAGTGAAAGGATATGCCTATAGCGgtaattgaat ... tgatggacagGTGGCGGCCGGAAAGTGACGAGAGTCGAGGTCTCGCTTAACGATGGGAAGT