1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatctccatcttggcgtacacaatttagcttacgtctattctgcacatggcctcttctcttagctgttacatgccctagtccttgaagttgttcctgcgacttttagagaagcatacagcgctgatacgcaacaccggttgatcag
species | Physcomitrella patens |
transcript | PP1S79_54V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG TGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAGEST: gi|162182305|gb|FC357176.1|FC357176
genomic: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatct ... ggttgatcagTGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAG
EST: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG TGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAGEST: gi|18369273|gb|BJ201358.1|BJ201358
genomic: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatct ... ggttgatcagTGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAG
EST: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGANAAATGGGGAG TGAATGTGCAGTCTCTCTCTGGGTCCEST: gi|100385980|gb|BY951174.1|BY951174
genomic: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatct ... ggttgatcagTGAATGTGCAGTCTCTCTCTGGGTCC
EST: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG TGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAGEST: gi|18365567|gb|BJ197644.1|BJ197644
genomic: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatct ... ggttgatcagTGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAG
EST: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG TGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCEST: gi|208358811|gb|DC935197.1|DC935197
genomic: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatct ... ggttgatcagTGAATGTGCAGTCTCTCTCTGGGTCCCCAGCC
EST: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG TGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAGEST: gi|100428360|gb|BY977766.1|BY977766
genomic: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatct ... ggttgatcagTGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAG
EST: CNNNNNNNGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG TGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAGEST: gi|208379665|gb|DC903720.1|DC903720
genomic: CAAAAAA-GAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatct ... ggttgatcagTGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAG
EST: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG TGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAGEST: gi|162155361|gb|FC331767.1|FC331767
genomic: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatct ... ggttgatcagTGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAG
EST: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG TGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAGEST: gi|18366816|gb|BJ198896.1|BJ198896
genomic: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatct ... ggttgatcagTGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAG
EST: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG TGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCEST: gi|100392460|gb|BY953374.1|BY953374
genomic: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatct ... ggttgatcagTGAATGTGCAGTCTCTCTCTGGGTCCCCAGCC
EST: CNNNNNNNGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG TGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAGEST: gi|18370401|gb|BJ202003.1|BJ202003
genomic: CAAAAAA-GAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatct ... ggttgatcagTGAATGTGCAGTCTCTCTCTGGGTCCCCAGCCAATTTTCAGGTCTACACAG
EST: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG TGAATGTGCAGTCTCTCTCTGGG
genomic: TCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatct ... ggttgatcagTGAATGTGCAGTCTCTCTCTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAGgtcggtatctccatcttggcgtacacaatttagcttacgtctattctgcacatggcctcttctcttagctgttacatgccctagtccttgaagttgttcctgcgacttttagagaagcatacagcgctgatacgcaacaccggttgatcag
- - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - GCAGCT