1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTGCATTCGAGCAAGCGGCTTCTACTTTAGGCATCAAAAATGACGATGGGGTTGTTGTATATGACTCCAAAGGCATCTTCAGCGCAGCTAGAGTTTGGTGgtatcgtcttgtttctcttctagggtagaacatggagtatttgtatggagtgttcaaacattatcgcctgttaaataatctcttacaatttttaaggctt...
species | Physcomitrella patens |
transcript | PP1S78_4V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCGCAGCTAGAGTTTGGTG GATGTTCAGAGCATTCGGCCATGAGAAAGTGTGGATCTTGGATGGAGGTTTEST: gi|162268668|gb|FC445165.1|FC445165
genomic: AGCGCAGCTAGAGTTTGGTGgtatcgtctt ... aatcatgcagGATGTTCAGAGCATTCGGCCATGAGAAAGTGTGGATCTTGGATGGAGGTTT
EST: AGCGCAGCTAGAGTTTGGTG GATGTTCAGAGCATTCGGCCATGAGAAAGTGTGGATCTTGGATGGAGGTTTEST: gi|162268669|gb|FC445166.1|FC445166
genomic: AGCGCAGCTAGAGTTTGGTGgtatcgtctt ... aatcatgcagGATGTTCAGAGCATTCGGCCATGAGAAAGTGTGGATCTTGGATGGAGGTTT
EST: GTCCTTGGGTCGAGTGAGGTCATCAGCGGCCGCTGCGTCGGAGTTTGGTGCGAAGGTCACAGATGAACCTGCAACCGTGGTAACTCCAAAGTGGCTTCATGATCAGCTTCAAGCTGGTGCCAATATEST: gi|100412842|gb|BY992463.1|BY992463
genomic: GTCCTTGGGTCGAGTGAGGTCATCAGCGGCCGCTGCGTCGGAGTTTGGTGCGAAGGTCACAGATGAACCTGCAACCGTGGTAACTCCAAAGTGGCTTCATGATCAGCTTCAAGCTGGTGCCAATAT
EST: GTCCTTGGGTCGAGTGAGGTCATCAGCGGCCGCTGCGTCGGAGTTTGGTGCGAAGGTCACAGATGAACCTGCAACCGTGGTAACTCCAAAGTGGCTTCATGATCAGCTTCAAGCTGGTGCCAATATEST: gi|100396273|gb|BY990048.1|BY990048
genomic: GTCCTTGGGTCGAGTGAGGTCATCAGCGGCCGCTGCGTCGGAGTTTGGTGCGAAGGTCACAGATGAACCTGCAACCGTGGTAACTCCAAAGTGGCTTCATGATCAGCTTCAAGCTGGTGCCAATAT
EST: GTCCTTGGGTCGAGTGAGGTCATCAGCGGCCGCTGCGTCGGAGTTTGGTGCGAAGGTCACAGATGAACCTGCAACCGTGGTAACTCCAAAGTGGCTTCATGATCAGCTTCAAGCTGGTGCCAATATEST: gi|208376166|gb|DC906797.1|DC906797
genomic: GTCCTTGGGTCGAGTGAGGTCATCAGCGGCCGCTGCGTCGGAGTTTGGTGCGAAGGTCACAGATGAACCTGCAACCGTGGTAACTCCAAAGTGGCTTCATGATCAGCTTCAAGCTGGTGCCAATAT
EST: GTCCTTGGGTCGAGTGAGGTCATCAGCGGCCGCTGCGTCGGANTTTGGTGCGAAGGTCACAGATGAACCTGCAACCGTGGTAACTCCAAAGTGGCTTCATGATCAGCTTCAAGCTGGTGCCAATATEST: gi|67725181|gb|BJ975440.1|BJ975440
genomic: GTCCTTGGGTCGAGTGAGGTCATCAGCGGCCGCTGCGTCGGAGTTTGGTGCGAAGGTCACAGATGAACCTGCAACCGTGGTAACTCCAAAGTGGCTTCATGATCAGCTTCAAGCTGGTGCCAATAT
EST: TTCAGCGCAGCTAGAGTTTGGTG GATGTTCAGAGCATTCGGCCATGAGAAAGTGTGGATCTTGGATGGAGGTTTEST: gi|67724933|gb|BJ975192.1|BJ975192
genomic: TTCAGCGCAGCTAGAGTTTGGTGgtatcgtctt ... aatcatgcagGATGTTCAGAGCATTCGGCCATGAGAAAGTGTGGATCTTGGATGGAGGTTT
EST: AGCTAGAGTTTGGTG GATGTTCAGAGCATTCGGCCATGAGAAAGTGTGGATCTTGGATGGAGGTTTEST: gi|67695360|gb|BJ955593.1|BJ955593
genomic: AGCTAGAGTTTGGTGgtatcgtctt ... aatcatgcagGATGTTCAGAGCATTCGGCCATGAGAAAGTGTGGATCTTGGATGGAGGTTT
EST: CTAGAGTTTNGNG GATGTTCAGAGCATTCGGCCATGAGAAAGTGTGGATCTTGGATGGAGGTTTEST: gi|162182755|gb|FC359502.1|FC359502
genomic: CTAGAGTTTGGTGgtatcgtctt ... aatcatgcagGATGTTCAGAGCATTCGGCCATGAGAAAGTGTGGATCTTGGATGGAGGTTT
EST: TGCGTCGGAGTTTGGTGCGAAGGTCACAGATGAACCTGCAACCGTGGTAACTCCAAAGTGGCTTCATGATCAGCTTCAAGCTGGTGCCAATATEST: gi|67572332|gb|BJ945156.1|BJ945156
genomic: TGCGTCGGAGTTTGGTGCGAAGGTCACAGATGAACCTGCAACCGTGGTAACTCCAAAGTGGCTTCATGATCAGCTTCAAGCTGGTGCCAATAT
EST: GTTGTTGTATATGACTCCAAAGGCATCTTCAGCGCAGCTAGAGTTTGGTG GATGTTCAGAGCATTCGGCCATGAGAAAGTGTGGATCTTGGATGGAGGTTT
genomic: GTTGTTGTATATGACTCCAAAGGCATCTTCAGCGCAGCTAGAGTTTGGTGgtatcgtctt ... aatcatgcagGATGTTCAGAGCATTCGGCCATGAGAAAGTGTGGATCTTGGATGGAGGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCATTCGAGCAAGCGGCTTCTACTTTAGGCATCAAAAATGACGATGGGGTTGTTGTATATGACTCCAAAGGCATCTTCAGCGCAGCTAGAGTTTGGTGgtatcgtcttgtttctcttctagggtagaacatggagtatttgtatggagtgttcaaacattatcgcctgttaaataatctcttacaatttttaaggctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT