1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TAAGGGTTGGTTCTATATGGTTACCTTGACAGCAAACAATCCAAGCGAGATTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttgatggcatcctgacctactcgcagtacgggttggcccatattcttgtttctaaatatgaacagtgacgtaagataattgtgtgtgtgtgtgt...
species | Physcomitrella patens |
transcript | PP1S78_28V6.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|22132000|gb|BQ826927.1|BQ826927
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|37850124|gb|BJ608132.1|BJ608132
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|67696122|gb|BJ956355.1|BJ956355
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|67696662|gb|BJ956895.1|BJ956895
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|37823861|gb|BJ581927.1|BJ581927
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|37831093|gb|BJ589105.1|BJ589105
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|37846605|gb|BJ604613.1|BJ604613
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|162237559|gb|FC413642.1|FC413642
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|162237558|gb|FC413641.1|FC413641
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|162242864|gb|FC417582.1|FC417582
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|162193740|gb|FC371267.1|FC371267
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|162223988|gb|FC400346.1|FC400346
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|15730155|gb|BI741703.1|BI741703
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|37836037|gb|BJ594045.1|BJ594045
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAA--ATTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|37824564|gb|BJ582630.1|BJ582630
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|162223987|gb|FC400345.1|FC400345
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|67693877|gb|BJ954110.1|BJ954110
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|37826909|gb|BJ584921.1|BJ584921
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|67570593|gb|BJ943417.1|BJ943417
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGACEST: gi|37828120|gb|BJ586132.1|BJ586132
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
EST: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAG CGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
genomic: TTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttga ... atgagtgcagCGTTATACAGAGGAAGAGAACTTACATGTACTGAAGTTCTGGAGAGAAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGGGTTGGTTCTATATGGTTACCTTGACAGCAAACAATCCAAGCGAGATTTGTCAGATTATGAAAAAGAAGGGCTTTGCATCACGAATTGTTATTCAGgtaattttgatggcatcctgacctactcgcagtacgggttggcccatattcttgtttctaaatatgaacagtgacgtaagataattgtgtgtgtgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG