Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttcaacgtccgtcctctttctagtttgttgattgttttggttaactctaataacctgcttttcaaagctccgacctcattcaaaaaaatgaaagctaattgaacttttcatgatcatgatag

Basic information

species Physcomitrella patens
transcript PP1S76_8V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208377393|gb|DC906648.1|DC906648
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100412613|gb|BY974821.1|BY974821
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|162249661|gb|FC426801.1|FC426801
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100393326|gb|BY989824.1|BY989824
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100375234|gb|BY948810.1|BY948810
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100396545|gb|BY990178.1|BY990178
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100432068|gb|BY978649.1|BY978649
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|67716232|gb|BJ966492.1|BJ966492
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|208383670|gb|DC907061.1|DC907061
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATNGACCGCAGANTTGT                         GAATGATTTTGCGTTGTACGCTGANANT-GTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100362831|gb|BY947550.1|BY947550
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100391024|gb|BY953034.1|BY953034
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|162183972|gb|FC359342.1|FC359342
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100387996|gb|BY988469.1|BY988469
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|162154400|gb|FC330207.1|FC330207
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100445704|gb|CJ970003.1|CJ970003
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|162258357|gb|FC434284.1|FC434284
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100358802|gb|BY946698.1|BY946698
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|162157552|gb|FC333810.1|FC333810
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100437296|gb|BY961449.1|BY961449
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100452031|gb|CJ975065.1|CJ975065
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCTATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|67719020|gb|BJ969279.1|BJ969279
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100376261|gb|BY986100.1|BY986100
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|208380336|gb|DC907661.1|DC907661
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGTTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100417188|gb|BY957211.1|BY957211
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|67718927|gb|BJ969186.1|BJ969186
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCANAGTTGT                         GAATGATTTTGCGTTGTACGCTGANACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100418352|gb|BY957377.1|BY957377
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100365284|gb|BY966902.1|BY966902
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttcaacgtccgtcctctttctagtttgttgattgttttggttaactctaataacctgcttttcaaagctccgacctcattcaaaaaaatgaaagctaattgaacttttcatgatcatgatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA