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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTCTCAAGACAAGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGTAACTTAGATCCTgtaagtcacactaatggttactttgttctaggaatgaaacagtgttatttctggttttaggttagacctgtcttacttatctgcagcctatgttcgtggatgttctaatgaaagtgaagcctagtgcttcaaaatctcgagaatgagcccatgatttcccttggctgtgcag

Basic information

species Physcomitrella patens
transcript PP1S70_254V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100368483|gb|BY967035.1|BY967035
EST:     AGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGTAACTTAGATCCT                         GATGTGGATGAGAAACTATTGTACGATACTTTCAGTGCCTTTGGCGTGATA
genomic: AGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGTAACTTAGATCCTgtaagtcaca ... ggctgtgcagGATGTGGATGAGAAACTATTGTACGATACTTTCAGTGCCTTTGGCGTGATA
EST: gi|162152540|gb|FC328818.1|FC328818
EST:     AGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGTAACTTAGATCCT                         GATGTGGATGAGAAACTATTGTACGATACTTTCAGTGCCTTTGGCGTGATA
genomic: AGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGTAACTTAGATCCTgtaagtcaca ... ggctgtgcagGATGTGGATGAGAAACTATTGTACGATACTTTCAGTGCCTTTGGCGTGATA
EST: gi|208375791|gb|DC936731.1|DC936731
EST:     AGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGTAACTTAGATCCT                         GATGTGGATGAGAAACTATTGTACGATACTTTCAGTGCCTTTGGCGTGATA
genomic: AGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGTAACTTAGATCCTgtaagtcaca ... ggctgtgcagGATGTGGATGAGAAACTATTGTACGATACTTTCAGTGCCTTTGGCGTGATA
EST: gi|208357964|gb|DC938835.1|DC938835
EST:     AGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGTAACTTANATCCT                         GATGTGGATGAGAAACTATTGTACGATACTTTCAGTGCCTTTGGCGTGATA
genomic: AGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGTAACTTAGATCCTgtaagtcaca ... ggctgtgcagGATGTGGATGAGAAACTATTGTACGATACTTTCAGTGCCTTTGGCGTGATA