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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACGTCGAACCTCGAATGGTCAATGGCAAGTCGATGGGCTGCAATGTGGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTATgtattgttcattcctactgcattcctagtcagagctaccagcttgactaaacgaactctaattgtttctgaaagttacttgtaatgatcgtacagcaact...

Basic information

species Physcomitrella patens
transcript PP1S6_413V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37828515|gb|BJ586527.1|BJ586527
EST:     GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTAT                         CTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
genomic: GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTATgtattgttca ... ttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
EST: gi|162250674|gb|FC428265.1|FC428265
EST:     GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTAT                         CTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
genomic: GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTATgtattgttca ... ttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
EST: gi|208398710|gb|DC916233.1|DC916233
EST:     GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTAT                         CTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
genomic: GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTATgtattgttca ... ttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
EST: gi|162223140|gb|FC398770.1|FC398770
EST:     GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTAT                         CTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
genomic: GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTATgtattgttca ... ttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
EST: gi|22131654|gb|BQ826728.1|BQ826728
EST:     TACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTAT                         CTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
genomic: TACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTATgtattgttca ... ttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG