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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTTTATGATGGAAGTTACCCCGGACTTGGTGTCCCAGATGGTATCAAGGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAGgtcaggggccaatcctttccattgttttgcacaaagtcagaagtcagcggtttactgtgaaaactaacttattcccaactagacccgattactgatgtgaagggtggtgcag

Basic information

species Physcomitrella patens
transcript PP1S6_359V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67694892|gb|BJ955125.1|BJ955125
EST:     GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAG                         TGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTAT
genomic: GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAGgtcaggggcc ... ggtggtgcagTGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTAT
EST: gi|162273546|gb|FC449691.1|FC449691
EST:     GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAG                         TGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTAT
genomic: GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAGgtcaggggcc ... ggtggtgcagTGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTAT
EST: gi|162245116|gb|FC421590.1|FC421590
EST:     GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAG                         TGTTTAATCAGTTGGGAAAGCCACTGGGTTTAATCCGGCAACCTAGTGTAT
genomic: GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAGgtcaggggcc ... ggtggtgcagTGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTAT
EST: gi|37838536|gb|BJ596544.1|BJ596544
EST:     GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAG                         TGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTAT
genomic: GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAGgtcaggggcc ... ggtggtgcagTGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTAT