1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGATTTTTGCTTGAAAGACTACGGTGTCATTGCCGTCCCGGAGATGTGTTACCGACAACTGACAAAGCAAGATCAGTTCATTGTTCTAGCAACTGATGGGgtatgtcttgcgcaaaaaccaccacaaaactctccatgaaacgtgttcttcaactcactgtgtcttgaaagcgatcttattacagttttcccttgagttcatagaatgtgccttggtaaatgttcag
species | Physcomitrella patens |
transcript | PP1S69_227V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACCGACAACTGACAAAGCAAGATCAGTTCATTGTTCTAGCAACTGATGGG ATTTGGGATGTTCTAAGCAATGAAGAGGTGGTGCAAGTGGTAGCGCAAGCG
genomic: ACCGACAACTGACAAAGCAAGATCAGTTCATTGTTCTAGCAACTGATGGGgtatgtcttg ... aaatgttcagATTTGGGATGTTCTAAGCAATGAAGAGGTGGTGCAAGTGGTAGCGCAAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTTTTGCTTGAAAGACTACGGTGTCATTGCCGTCCCGGAGATGTGTTACCGACAACTGACAAAGCAAGATCAGTTCATTGTTCTAGCAACTGATGGGgtatgtcttgcgcaaaaaccaccacaaaactctccatgaaacgtgttcttcaactcactgtgtcttgaaagcgatcttattacagttttcccttgagttcatagaatgtgccttggtaaatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA