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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCTAGATCTCAACGATGAGAACGAAAAGAAGTTGGTGGATGGTGTATTTTGGAATGCTATGGACAATTTATCGGATGATGACAAAAAGCTTCCTCAGgtgtatactctttcttgtaaacatttcaagagctgtcgatccatcacaaaattgttggattttacctgactacatcatgcgccacatgcttttgtatttg...

Basic information

species Physcomitrella patens
transcript PP1S69_14V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S69_14V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 5
CAAGCTAGATCTCAACGATGAGAACGAAAAGAAGTTGGTGGATGGTGTATTTTGGAATGCTATGGACAATTTATCGGATGATGACAAAAAGCTTCCTCAGgtgtatactctttcttgtaaacatttcaagagctgtcgatcc--atca-caaaattgttggattttacctgactacatcatgcgccaca-tgcttttgtatttg--
 ||| | ||  | || || ||  | || |||       | ||     | ||||||| ||||||||| |   | || |||||||||||||||||||||||||||  | ||| ||  |||      |||| |   | |  |||   | || ||||     |||| |||| |    || |   |   ||  | |      ||   ||  
TAAGATGGACTTGAATGAGGATGATGAGAAGGCAAACATCGAAACAATTTTTTGGAGTGCTATGGATATGCTTTCTGATGATGACAAAAAGCTTCCTCAGgtgagtcctcatttctgt------ttcaggttttttttatctcaagcatcaaacacaatggaatttaacactgtaaagtgtagaccttagtaaccaggttcctgga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162156045|gb|FC332212.1|FC332212
EST:     TTTGGAATGCTATGGACAATTTATCGGATGATGACAAAAAGCTTCCTCAG                         GTTTCTCATCTACTTCCATTACTGAAGCGCGGAATTGGTGTGCATCACTCT
genomic: TTTGGAATGCTATGGACAATTTATCGGATGATGACAAAAAGCTTCCTCAGgtgtatactc ... cttaaatcagGTTTCTCATCTACTTCCATTACTGAAGCGCGGAATTGGTGTGCATCACTCT