1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CACAACGGTTGGCATCATTGACAAGATTTCGGGAGAAGCGCAAAGAGCGGTGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAGgtagtttttgtgatgacccgtgatgttttgcactcacttctgttttttctcgtcttaagcatttcttgctctaaaaaatgatttggaacgtagaaaccta...
species | Physcomitrella patens |
transcript | PP1S69_103V6.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAG GATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGAEST: gi|162193633|gb|FC371238.1|FC371238
genomic: TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAGgtagtttttg ... ctgtgttcagGATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGA
EST: TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAG GATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGAEST: gi|162273741|gb|FC449464.1|FC449464
genomic: TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAGgtagtttttg ... ctgtgttcagGATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGA
EST: TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAG GATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGAEST: gi|162181522|gb|FC358136.1|FC358136
genomic: TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAGgtagtttttg ... ctgtgttcagGATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGA
EST: TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAGACTGTGTTCAG
genomic: TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTC--A-A--------AGgtagtttttg ...
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAACGGTTGGCATCATTGACAAGATTTCGGGAGAAGCGCAAAGAGCGGTGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAGgtagtttttgtgatgacccgtgatgttttgcactcacttctgttttttctcgtcttaagcatttcttgctctaaaaaatgatttggaacgtagaaaccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT