ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

GATACGTTGAGTGAAGAGTCGTACAAGGACAGCACATTGATCATGCAGTTGCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtactcgttgatcgctgcagtggtttatagttgtgggatgagttgtactgtggagctgatgtatgatacttgttgacgggtttggatgctctgaagtttgctttgattgtttgtattgaagcgcacttaaaaacagaaatggtcgaagaggatgtttgagcttggtgctgaatcgatgggttgtgcgttcag

Basic information

species	Physcomitrella patens
transcript	PP1S67_176V6.1
intron #	5
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: PP1S67_176V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA07G35240.1 (Glycine max), 5'ss of exon 5

GATACGTTGAGTGAAGAGTCGTACAAGGACAGCACATTGATCATGCAGTTGCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtactcgttgatcgctgcagtggtttatagttgtgggatgagttgtactgtggagctgatgtatgatacttgttgacgggtttggatgctctgaagtttgctttgattgtttgtattgaagcgcacttaaaaacagaaatggtcgaagaggatgtttgagcttggtgctgaatcgatgggttgtgcgttcag
|| || |||||||||||||| |||||||||||||| |||||||||||| ||||||| || ||||| ||| | ||||| || ||||| |  ||||| ||||||||  |  |  ||||    ||   |    |  | |||     ||  | ||| | |     | |   ||   |  ||| | |    |   |   ||||   |                                                                                               
GACACCTTGAGTGAAGAGTCATACAAGGACAGCACTTTGATCATGCAGCTGCTGAGAGACAATCTCACTCTCTGGACCTCCGATCTACCTGAGGATGGAGgtatgatcatgattgagacttggcataagatgcacttggactctgcctcgtaatattaccataaaacatagcaactgtcgtct--ctaacaaaatctgttat-----------------------------------------------------------------------------------------------

upper sequence: PP1S67_176V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA20G03120.1 (Glycine max), 5'ss of exon 5

GATACGTTGAGTGAAGAGTCGTACAAGGACAGCACATTGATCATGCAGTTGCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtactcgttgatcgctgcagtggtttatagttgtgggatgagttgtactgtggagctgatgtatgatacttgttgacgggtttggatgctctgaagtttgctttgattgtttgtattgaagcgcacttaaaaacagaaatggtcgaagaggatgtttgagcttggtgctgaatcgatgggttgtgcgttcag
|| || |||||||||||||| |||||||||||||| |||||||||||| ||||||| || ||||| ||| | ||||| || ||| | |  ||||| ||||||||  |  |  ||||    ||   |    |  | |||     ||  |  || | |     | | | ||   |  | ||  |    |   || ||||    |                                                                                               
GACACCTTGAGTGAAGAGTCATACAAGGACAGCACTTTGATCATGCAGCTGCTGAGAGACAATCTCACTCTCTGGACCTCTGATTTACCTGAGGATGGAGgtatgatcatgattgagacttgacataagatgcatttggattctgcctcttaatattaccataa-gcatagcaacttttttct--ctaacatactctttgtta----------------------------------------------------------------------------------------------

upper sequence: PP1S67_176V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA01G07070.1 (Glycine max), 5'ss of exon 5

GATACGTTGAGTGAAGAGTCGTACAAGGACAGCACATTGATCATGCAGTTGCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgt-attgtactcgttgatcgctgcagtg-gtttatagttgtgggatgagttgtactgtggagctgatgtatgatacttgttgacgggtttggatgctctgaagtttgctttgattgtttgtattgaagcgcacttaaaaacagaaatggtcgaagaggatgtttgagcttggtgctgaatcgatgggttgtgcgttcag
|| ||  ||||||||||||| |||||||||||||| |||||||||||| || |||| || || |||||| | ||||| || ||| | |  ||||| |||||| |   |  | |    | | |  |    |  | |   | | | ||  |     |  |  |  |  || |  |||  |||||  |  |   ||||  ||  ||                                                                                                
GACACCCTGAGTGAAGAGTCATACAAGGACAGCACTTTGATCATGCAGCTGTTGAGAGACAACCTGACTCTCTGGACCTCTGATTTGCCTGAGGATGGAGgtgagaatgattgacacttgatataagatgcatttgagttttgcatagggaaagcaataaa--tattgcaccata--tgttgctgaataatgatgtcctagaga-----------------------------------------------------------------------------------------------

upper sequence: PP1S67_176V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA02G12930.1 (Glycine max), 5'ss of exon 5

GATACGTTGAGTGAAGAGTCGTACAAGGACAGCACATTGATCATGCAGTTGCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtactcgttgatcgctgcagtggtttatagttgtgggatgagttgtactgtggagctgatgt-atgatacttgttgacgggtttggatgctctgaagtttgctttgattgtttgtattgaagcgcacttaaaaacagaaatggtcgaagaggatgtttgagcttggtgctgaatcgatgggttgtgcgttcag
|| ||  ||||||||||||| |||||||||||||| |||||||||||| || |||| || || || ||| | ||||| || ||| | |  ||||| ||||||||   | |  ||||    ||   |    |  | ||| |   ||  | |      | |    || |         |||||  |  |   ||||   |  |                                                                                                 
GACACCCTGAGTGAAGAGTCATACAAGGACAGCACTTTGATCATGCAGCTGTTGAGAGACAACCTTACTCTCTGGACTTCCGATTTACCAGAGGATGGAGgtatgagaatgattgaaacttgatattagatgcatttgagttttgcatagggaaa-gcaataaatattgcaccgtatgttgctgaataatgatgtcttaga-------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|162265043|gb|FC440922.1|FC440922

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|37836964|gb|BJ594972.1|BJ594972

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|67698866|gb|BJ959099.1|BJ959099

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162242420|gb|FC416150.1|FC416150

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|18338245|gb|BJ170269.1|BJ170269

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|37824917|gb|BJ582983.1|BJ582983

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|37848049|gb|BJ606057.1|BJ606057

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|37824545|gb|BJ582611.1|BJ582611

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|18337976|gb|BJ170000.1|BJ170000

EST:     GCTGAGGGATAATCTGGCTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|7067273|gb|AW497128.1|AW497128

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGTAAT
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAGTAAT

EST: gi|22132435|gb|BQ827160.1|BQ827160

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162277839|gb|FC454302.1|FC454302

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGANAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208396682|gb|DC929033.1|DC929033

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|37832037|gb|BJ590049.1|BJ590049

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|18338543|gb|BJ170567.1|BJ170567

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|67699804|gb|BJ960037.1|BJ960037

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208367542|gb|DC943945.1|DC943945

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGAATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162210234|gb|FC386420.1|FC386420

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162174284|gb|FC350667.1|FC350667

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|37827194|gb|BJ585206.1|BJ585206

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208357329|gb|DC949931.1|DC949931

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162167056|gb|FC342518.1|FC342518

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGANAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162260947|gb|FC438004.1|FC438004

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162174283|gb|FC350666.1|FC350666

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|67698970|gb|BJ959203.1|BJ959203

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|37830904|gb|BJ588916.1|BJ588916

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162265042|gb|FC440921.1|FC440921

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|37825061|gb|BJ583127.1|BJ583127

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|37832988|gb|BJ591000.1|BJ591000

EST:     CTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: CTGAGGGATAATCTGACTTTGTGGACATCGGATCT-CCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|67691537|gb|BJ951770.1|BJ951770

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208360989|gb|DC957496.1|DC957496

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208397882|gb|DC916189.1|DC916189

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|18336658|gb|BJ168681.1|BJ168681

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208365472|gb|DC954713.1|DC954713

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162162877|gb|FC338113.1|FC338113

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208364787|gb|DC943647.1|DC943647

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208382964|gb|DC927714.1|DC927714

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162242247|gb|FC418447.1|FC418447

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208346498|gb|DC917451.1|DC917451

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208349647|gb|DC917825.1|DC917825

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162229444|gb|FC405830.1|FC405830

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208387528|gb|DC953270.1|DC953270

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208356273|gb|DC957349.1|DC957349

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162230670|gb|FC406093.1|FC406093

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208387631|gb|DC953373.1|DC953373

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208366430|gb|DC943906.1|DC943906

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|18333689|gb|BJ165704.1|BJ165704

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208371040|gb|DC955916.1|DC955916

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208365818|gb|DC951053.1|DC951053

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208392097|gb|DC946165.1|DC946165

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162259101|gb|FC436408.1|FC436408

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|18340333|gb|BJ172361.1|BJ172361

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208351274|gb|DC921553.1|DC921553

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208397909|gb|DC916664.1|DC916664

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|37853249|gb|BJ611257.1|BJ611257

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162242421|gb|FC416151.1|FC416151

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGANAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162277838|gb|FC454301.1|FC454301

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208393871|gb|DC946109.1|DC946109

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208366539|gb|DC954847.1|DC954847

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|18338407|gb|BJ170431.1|BJ170431

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|37839299|gb|BJ597307.1|BJ597307

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208363087|gb|DC946942.1|DC946942

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162173997|gb|FC350512.1|FC350512

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208366918|gb|DC951405.1|DC951405

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162173996|gb|FC350511.1|FC350511

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162167055|gb|FC342517.1|FC342517

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208382673|gb|DC919827.1|DC919827

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|37828810|gb|BJ586822.1|BJ586822

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208375111|gb|DC944850.1|DC944850

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|162260946|gb|FC438003.1|FC438003

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208349293|gb|DC918029.1|DC918029

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208364977|gb|DC947119.1|DC947119

EST:     GCTGAGGGATGATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208382373|gb|DC927907.1|DC927907

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208371871|gb|DC951703.1|DC951703

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

EST: gi|208375272|gb|DC945014.1|DC945014

EST:     GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAG                         GTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG
genomic: GCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 55

GATACGTTGAGTGAAGAGTCGTACAAGGACAGCACATTGATCATGCAGTTGCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtact ... gtgcgttcagGTGACGATCAGCCCAAGGGAGATGATATGAGGGGTGATGACGGAAAG

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Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATACGTTGAGTGAAGAGTCGTACAAGGACAGCACATTGATCATGCAGTTGCTGAGGGATAATCTGACTTTGTGGACATCGGATCTCCAGGAGGAGGGAGgtattgtactcgttgatcgctgcagtggtttatagttgtgggatgagttgtactgtggagctgatgtatgatacttgttgacgggtttggatgctctgaagtttgctttgattgtttgtattgaagcgcacttaaaaacagaaatggtcgaagaggatgtttgagcttggtgctgaatcgatgggttgtgcgttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG