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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttcttagtccatgcactcgtagaatatgtgtacccccttggttttctgacttagctcgtatgtgttcaagtctaaccttttccttgttgcatcat...

Basic information

species Physcomitrella patens
transcript PP1S64_220V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100388772|gb|BY970920.1|BY970920
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162155391|gb|FC332005.1|FC332005
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100436557|gb|BY961277.1|BY961277
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATAAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100419458|gb|BY957584.1|BY957584
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100356833|gb|BY965303.1|BY965303
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTTCCC-TCCCGCAATATCCTCTGTACTCCGGCA-CAATTCAAC
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTT-CCCATCCCGCAATATCCTCTGTACTCCG-CAACAATTCAAC
EST: gi|162181882|gb|FC357689.1|FC357689
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100352692|gb|BY945399.1|BY945399
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAAACATTTCA-CT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAA-CAATTCAACT
EST: gi|162171669|gb|FC348130.1|FC348130
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100385535|gb|BY969872.1|BY969872
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCCGCA-TATCCTCTGTACTCCGCAANCATTTCA-C
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCC-GCAATATCCTCTGTACTCCGCAA-CAATTCAAC
EST: gi|162199479|gb|FC373781.1|FC373781
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162223962|gb|FC400320.1|FC400320
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162160782|gb|FC336681.1|FC336681
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100399005|gb|BY990625.1|BY990625
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162197024|gb|FC373364.1|FC373364
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100419055|gb|BY975835.1|BY975835
EST:     AGGTGTGGCGCAGGTCCTCAACGGCTCT-ATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGGCA-TATCCTCTGTACTCCGCAACAATTCAACT
genomic: AGGTGTGGCGCAGGTCCTCAACG-CTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCG-CAATATCCTCTGTACTCCGCAACAATTCAACT
EST: gi|162252058|gb|FC428297.1|FC428297
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100425857|gb|BY977155.1|BY977155
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100412607|gb|BY974818.1|BY974818
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCTTCCCGCAATTTCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162156210|gb|FC332585.1|FC332585
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100444613|gb|BY982442.1|BY982442
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162153784|gb|FC329915.1|FC329915
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162154422|gb|FC330424.1|FC330424
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100356462|gb|BY946377.1|BY946377
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100364771|gb|BY947900.1|BY947900
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162166622|gb|FC343514.1|FC343514
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162191243|gb|FC367921.1|FC367921
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162170441|gb|FC347626.1|FC347626
EST:     TTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: TTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100388497|gb|BY952099.1|BY952099
EST:     AGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAAATGAAA-GGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAA-TGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100436447|gb|BY961222.1|BY961222
EST:     -GGTGTGGCGCAGGTCCTCCACGCTCTTATTCGTAATGGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTTCAACT
genomic: AGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATG-AAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATT-CAACT
EST: gi|162191349|gb|FC368145.1|FC368145
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100357096|gb|BY983691.1|BY983691
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162246304|gb|FC421049.1|FC421049
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100384231|gb|BY969362.1|BY969362
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATACA-CTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100412565|gb|BY974797.1|BY974797
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTTCCATCCCGCAATATCNTCTGTACTCCGCA-CAATTTAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162152416|gb|FC327979.1|FC327979
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100446806|gb|CJ971105.1|CJ971105
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100384129|gb|BY950515.1|BY950515
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCGGCAACATTTCA-CTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162187053|gb|FC362835.1|FC362835
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|162244637|gb|FC424604.1|FC424604
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100386709|gb|BY970250.1|BY970250
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCA-CAATTNCA-CT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATT-CAACT
EST: gi|162189527|gb|FC365749.1|FC365749
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
EST: gi|100388392|gb|BY951994.1|BY951994
EST:     AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG                         GTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT
genomic: AAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 48

TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttctt ... aacgatgcagGTGCTGGTTCCCATCCCGCAATATCCTCTGTACTCCGCAACAATTCAACTTTTGGGGGGCACATTGGTGCCTTACTATTTGACTGAAGAAGACAACTGGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGGgtaatttcttagtccatgcactcgtagaatatgtgtacccccttggttttctgacttagctcgtatgtgttcaagtctaaccttttccttgttgcatcat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG