1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTTTACTGCGTTTGTCGGTATGACGTTCCCCTTCTTTGGAGCTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatctagtctaccgactcaatgttgcagctcgttattcttagtgatctcttttcctttaagcgctcgtacttgtgtagtgtttgactaggaattgaagcacttatccaagtgtttgtgaaattgtggcag
species | Physcomitrella patens |
transcript | PP1S5_176V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|208400809|gb|DC925089.1|DC925089
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCNGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|37827465|gb|BJ585477.1|BJ585477
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|162273084|gb|FC447778.1|FC447778
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|162151795|gb|FC328652.1|FC328652
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|162264616|gb|FC440899.1|FC440899
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|67725436|gb|BJ975695.1|BJ975695
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|162151883|gb|FC328129.1|FC328129
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|162273083|gb|FC447777.1|FC447777
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT TTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|162175568|gb|FC351792.1|FC351792
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|208358586|gb|DC946547.1|DC946547
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|15261771|gb|BI437081.1|BI437081
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGG-TTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|67726227|gb|BJ976486.1|BJ976486
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|162175567|gb|FC351791.1|FC351791
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|162224629|gb|FC400525.1|FC400525
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|162260734|gb|FC435386.1|FC435386
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|162224628|gb|FC400524.1|FC400524
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTCEST: gi|162182869|gb|FC358953.1|FC358953
genomic: CTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
EST: GGATTCGCCTTCGCTCCTACAACATACTTT CTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
genomic: GGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatct ... attgtggcagCTGCCGTGTATCATGTGGCTGTGCATCGTCAAGCCCAAGGCATTCAGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTTACTGCGTTTGTCGGTATGACGTTCCCCTTCTTTGGAGCTCTTCTTGGTTTCTTCGGAGGATTCGCCTTCGCTCCTACAACATACTTTgtaagaatctagtctaccgactcaatgttgcagctcgttattcttagtgatctcttttcctttaagcgctcgtacttgtgtagtgtttgactaggaattgaagcacttatccaagtgtttgtgaaattgtggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT