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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATTGAGATATTTGCATGAGGATTGTCGGGTTGGATGCATAGTGCACAGAGACTTGCGTCCCAACAATATTCTGCTTACTCACGACTTTGAACCTATGgtatgtggcgttccacacactgtttcgaacggtaaatgtttctgtttattgtctgaatggccacatgcctattcctaatgtggttaccgacagcacaagtgttttttggatatcag

Basic information

species Physcomitrella patens
transcript PP1S59_359V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S59_359V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ34463 (Selaginella moellendorffii), 5'ss of exon 6
AGGATTGAGATATTTGCATGAGGATTGTCGGGTTGGATGCATAGTGCACAGAGACTTGCGTCCCAACAATATTCTGCTTACTCACGACTTTGAACCTATGgtatgtggcgttccacacactgtttcgaacggtaaatgtttctgtttattgtctgaatggccacatgcctattcctaatgtggttaccgacagcacaagtgttttttggatatcag
||||||  | ||| |||| ||||| || ||||| || |||||||| ||||||||| ||||||| ||||| ||||| || || || ||||  |||||||||||| ||  | ||      |       | |||    ||||| | ||||  |  | |                                                             
AGGATTACGGTATCTGCACGAGGAATGCCGGGTCGGCTGCATAGTTCACAGAGACATGCGTCCTAACAACATTCTTCTAACACATGACTACGAACCTATGgtaagttacattgt---tatgaaagagcacgcgtgatgttccggttttgttccag-------------------------------------------------------------

upper sequence: PP1S59_359V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ30369 (Selaginella moellendorffii), 5'ss of exon 2
AGGATTGAGATATTTGCATGAGGATTGTCGGGTTGGATGCATAGTGCACAGAGACTTGCGTCCCAACAATATTCTGCTTACTCACGACTTTGAACCTATGgtatgtggcgt-tccacacac-tgtttcgaacggtaaatgtttctgtttattgtctgaatggccacatgcctattcctaatgtggttaccgacagcacaagtgttttttggatatcag
 |||||| | || ||||| || || || || ||||| ||||| || ||||| ||| ||||||| ||||||||||| || || ||||||||||| || |||||  |||   | || ||      || ||   ||      ||| | ||||||    |   ||     |  |                                                
GGGATTGCGTTACTTGCACGAAGAATGCCGTGTTGGTTGCATCGTCCACAGGGACATGCGTCCAAACAATATTCTTCTGACACACGACTTTGAGCCCATGgttagtgctttgtctacgtttgcgtgtctgccgtcgtgcgttac-gtttatctgatacgtgagattaaacag----------------------------------------------