1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGTGTTGAAGCGGTTAATCTCAATCATGGCGAACTCATATGATCAGCGTGCGAAGATCCTGAATGGCACTCACAAGTCGCATGTTCACTCAGTTGAGGAGgtgaatacccctcctctcatttttaaagtcacatttgtagcatccggttgcggaagtggatgtattctcattgctaacttctaataagccagcttctgttggttgttacag
species | Physcomitrella patens |
transcript | PP1S57_92V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CACAAGTCGCATGTTCACTCAGTTGAGGAG GCGTTGAAACTGGCAGAGTACAGGCCAGTCATAGACGTGAACCATTTGCCAEST: gi|162261721|gb|FC437010.1|FC437010
genomic: CACAAGTCGCATGTTCACTCAGTTGAGGAGgtgaataccc ... gttgttacagGCGTTGAAACTGGCAGAGTACAGGCCAGTCATAGACGTGAACCATTTGCCA
EST: CGAAGATCCTGAATGGCACTCACAAGTCGCATGTTCACTCAGTTGAGGAG GCGTTGAAACTGGCAGAGTACAGGCCAGTCATAGACGTGAACCATTTGCCA
genomic: CGAAGATCCTGAATGGCACTCACAAGTCGCATGTTCACTCAGTTGAGGAGgtgaataccc ... gttgttacagGCGTTGAAACTGGCAGAGTACAGGCCAGTCATAGACGTGAACCATTTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGTTGAAGCGGTTAATCTCAATCATGGCGAACTCATATGATCAGCGTGCGAAGATCCTGAATGGCACTCACAAGTCGCATGTTCACTCAGTTGAGGAGgtgaatacccctcctctcatttttaaagtcacatttgtagcatccggttgcggaagtggatgtattctcattgctaacttctaataagccagcttctgttggttgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG