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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAGgtattcttggctagctttctgtacttgtgttgctttggcacttcttccaaggactcaagtggtcgatggtgggatcaagtccatcgcttgctatttttga...

Basic information

species Physcomitrella patens
transcript PP1S56_263V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162214884|gb|FC391019.1|FC391019
EST:     GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAG                         ACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
genomic: GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAGgtattcttgg ... tattgtgcagACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
EST: gi|67508098|gb|BJ940969.1|BJ940969
EST:     GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAG                         ACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
genomic: GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAGgtattcttgg ... tattgtgcagACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
EST: gi|162214885|gb|FC391020.1|FC391020
EST:     GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAG                         ACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
genomic: GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAGgtattcttgg ... tattgtgcagACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
EST: gi|37853329|gb|BJ611337.1|BJ611337
EST:     GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAG                         ACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
genomic: GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAGgtattcttgg ... tattgtgcagACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAGgtattcttggctagctttctgtacttgtgttgctttggcacttcttccaaggactcaagtggtcgatggtgggatcaagtccatcgcttgctatttttga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG