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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAAAACGCATGGAGTTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGAgtgagtaccctaccctttatcatacttagaaacagtccactgctttgctctacaatcaacttttttgtcgattattgagatggtcatttgcaaacaaattgtgggtcatgagtgtgtatttgggacgtgctaatttacattcggcttgaatctatgtgagcttatag

Basic information

species Physcomitrella patens
transcript PP1S55_202V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162195942|gb|FC372659.1|FC372659
EST:     TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGA                         GAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCC
genomic: TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGAgtgagtaccc ... gagcttatagGAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCC
EST: gi|162149863|gb|FC326186.1|FC326186
EST:     TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGA                         GAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGT
genomic: TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGAgtgagtaccc ... gagcttatagGAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGT
EST: gi|162193792|gb|FC368706.1|FC368706
EST:     TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGA                         GAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGT
genomic: TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGAgtgagtaccc ... gagcttatagGAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGT
EST: gi|162158482|gb|FC334485.1|FC334485
EST:     TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGA                         GAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGT
genomic: TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGAgtgagtaccc ... gagcttatagGAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAAAACGCATGGAGTTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGAgtgagtaccctaccctttatcatacttagaaacagtccactgctttgctctacaatcaacttttttgtcgattattgagatggtcatttgcaaacaaattgtgggtcatgagtgtgtatttgggacgtgctaatttacattcggcttgaatctatgtgagcttatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG