1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAGTAGAGCATATTCCTCAACTTGTTGAGAGGTCGATCGACGCCATAAAAATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcattggcgacgatcgtttttactgccttaaagttgtgagctccgcccttgtttgtgactgtgttgaggtcttcagtaaagtagttattcttcataaagtctggcaattgaagtggtgggataatgttttgcag
species | Physcomitrella patens |
transcript | PP1S55_159V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTANTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAATGTGGACCCTACGATGCCATNCEST: gi|208365688|gb|DC944144.1|DC944144
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|162171977|gb|FC349257.1|FC349257
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|37841565|gb|BJ599573.1|BJ599573
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|162179521|gb|FC356561.1|FC356561
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|162158828|gb|FC335351.1|FC335351
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCTTACGATGCCATTCEST: gi|162174063|gb|FC350578.1|FC350578
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|162266763|gb|FC442279.1|FC442279
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|37852089|gb|BJ610097.1|BJ610097
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|37842080|gb|BJ600088.1|BJ600088
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|162179520|gb|FC356560.1|FC356560
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|37846074|gb|BJ604082.1|BJ604082
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|162197969|gb|FC373984.1|FC373984
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|37841159|gb|BJ599167.1|BJ599167
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|162162076|gb|FC338867.1|FC338867
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|37852017|gb|BJ610025.1|BJ610025
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|37853578|gb|BJ611586.1|BJ611586
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: CCCTCATGGAAATGGGCCGTCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTCEST: gi|18341709|gb|BJ173744.1|BJ173744
genomic: CCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: TCTTGTAGTTCATG TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: TCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTAGAGCATATTCCTCAACTTGTTGAGAGGTCGATCGACGCCATAAAAATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcattggcgacgatcgtttttactgccttaaagttgtgagctccgcccttgtttgtgactgtgttgaggtcttcagtaaagtagttattcttcataaagtctggcaattgaagtggtgggataatgttttgcag
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