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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATCAGAGCGATGTAATTGGAGTTGGAGGCATTGACTATAGCGACCATATTGCCTCCTTTTCATCACGAGGCATGAGCACCTGGGAAATCCCACATGGgttagtactctctatgtctgatgacaccataatattcttattggacataattcatgttggatgtttgagggaacgtgaaaaatatttttctaccgtgaac...

Basic information

species Physcomitrella patens
transcript PP1S55_133V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S55_133V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA09G32400.1 (Glycine max), 5'ss of exon 5
CTGATCAGAGCGATGTAATTGGAGTTGGAGGCATTGACTATAGCGACCATATTGCCTCCTTTTCATCACGAGGCATGAGCACCTGGGAAATCCCACATGGgttag---tactc-tctatgtct---gatgacaccataatattcttattggacataattcatgttggatgtttgagggaacgtgaaaaatatttttctaccgtgaac
| ||||| || ||||| ||||| ||||| || ||||||||||| |||||||| ||||||||||| || || |||||||| ||||||||  | || ||||||| |    ||||  | | | |||   | | |||    |  |||| |  |     |      |||||  | |||     || | | |      |||| | || |    
CAGATCAAAGTGATGTCATTGGTGTTGGTGGTATTGACTATAGTGACCATATAGCCTCCTTTTCCTCGCGTGGCATGAGTACCTGGGAGCTTCCTCATGGgtaacatttacttatttgtttctatagcttacatttcagcattcctgcttctactggcatttgttgagtatttct---aatgaggacttctgtttttttccct----

upper sequence: PP1S55_133V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA07G09410.1 (Glycine max), 5'ss of exon 5
CTGATCAGAGCGATGTAATTGGAGTTGGAGGCATTGACTATAGCGACCATATTGCCTCCTTTTCATCACGAGGCATGAGCACCTGGGAAATCCCACATGGgttag---tactc-tctatgtct---gatgacaccataatattcttattggacataattcatgttggatgtttgagggaacgtgaaaaatatttttctaccgtgaac
| ||||| || ||||| || || ||||| || ||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||  | || ||||||| |    ||||  | | | |||   | | |||    |  | || |  |  |  |   |  ||||| || |||      | |      || ||||||          
CAGATCAAAGTGATGTCATCGGTGTTGGTGGTATTGACTATAGTGACCATATAGCCTCCTTTTCCTCACGTGGCATGAGTACCTGGGAGCTTCCTCATGGgtaacatttacttatttgtttctctagcttacatttcatcactcctgcttcaactggcttttgttgaatatttccaatgaggacttctatttttttcctt-------

upper sequence: PP1S55_133V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ20960 (Selaginella moellendorffii), 5'ss of exon 5
CTGATCAGAGCGATGTAATTGGAGTTGGAGGCATTGACTATAGCGACCATATTGCCTCCTTTTCATCACGAGGCATGAGCACCTGGGAAATCCCACATGGgttagtactctctatgtctgatgacaccataatattcttattggacataattcatgttggatgtttgagggaacgtgaaaaatatttttctaccgtgaac
||||||| | ||| || ||||| |||||||| || ||  | | |||||||||| | ||||| ||||| || || ||||||||||||||||| || |||||||  ||  || |||   |  |||| || |||  | |   | |        | ||                                              
CTGATCAAAACGACGTGATTGGTGTTGGAGGGATCGATCACAACGACCATATTTCGTCCTTCTCATCTCGCGGAATGAGCACCTGGGAAATTCCTCATGGgtatgtggtcactaatccatatga-acaatataacttcaagtttttcggttccag---------------------------------------------